Modelling of zero-inflation improves inference of metagenomic gene count data
Viktor Jonsson, Tobias Österlund, Olle Nerman, Erik Kristiansson
Statistical Methods in Medical Research, Journal article 2019
Journal article

CMY-1/MOX-family AmpC β-lactamases MOX-1, MOX-2 and MOX-9 were mobilized independently from three Aeromonas species.
Stefan Ebmeyer, Erik Kristiansson, D. G. Joakim Larsson
The Journal of antimicrobial chemotherapy, Journal article 2019
Journal article

Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes
Nachiket Marathe, Fanny Berglund, Mohammad Razavi, Chandan Pal, Johannes Dröge et al.
Microbiome, Journal article 2019
Journal article

177Lu-octreotate therapy for neuroendocrine tumours is enhanced by Hsp90 inhibition
Tobias Hofving, Viktor Sandblom, Yvonne Arvidsson, Emman Shubbar, Gülay Altiparmak et al.
Endocrine-Related Cancer, Journal article 2019
Journal article

mRNA Expression and Biomarker Responses in Perch at a Biomonitoring Site in the Baltic Sea - Possible Influence of Natural Brominated Chemicals
Lars Förlin, Noomi Asker, Mats H. Töpel, Tobias Österlund, Erik Kristiansson et al.
Frontiers in Marine Science, Journal article 2019
Journal article

Pharmacology beyond the patient - The environmental risks of human drugs
L. Gunnarsson, J. R. Snapk, B. Verbruggen, S. F. Owen, Erik Kristiansson et al.
Environment International, Journal article 2019
Journal article

Introducing ribosomal tandem repeat barcoding for fungi
Christian Wurzbacher, Ellen Larsson, Johan Bengtsson-Palme, Silke Van den Wyngaert, Sten Svantesson et al.
Molecular Ecology Resources, Journal article 2019
Journal article

Identification and reconstruction of novel antibiotic resistance genes from metagenomes
Fanny Berglund, Tobias Österlund, Fredrik Boulund, Nachiket Marathe, D. G. Joakim Larsson et al.
Microbiome, Journal article 2019
Journal article

Accurate and Sensitive Analysis of Minimal Residual Disease in Acute Myeloid Leukemia Using Deep Sequencing of Single Nucleotide Variations.
Erik Malmberg, Anna Rehammar, Mariana Buongermino Pereira, Jonas Abrahamsson, Tore Samuelsson et al.
The Journal of molecular diagnostics : JMD, Journal article 2019
Journal article

The PER extended-spectrum beta-lactamases originate from Pararheinheimera sp.
Stefan Ebmeyer, Erik Kristiansson, D. G. Joakim Larsson
International journal of antimicrobial agents, Journal article 2018
Journal article

Computational and Statistical Considerations in the Analysis of Metagenomic Data
Fredrik Boulund, Mariana Buongermino Pereira, Viktor Jonsson, Erik Kristiansson
Metagenomics: Perspectives, Methods, and Applications, Chapter in book 2017
Chapter in book

Does antifouling paint select for antibiotic resistance?
Carl-Fredrik Flach, Chandan Pal, Carl Johan Svensson, Erik Kristiansson, Marcus Östman et al.
The Science of the total environment, Journal article 2017
Journal article

Identification of 76 novel B1 metallo-beta-lactamases through large-scale screening of genomic and metagenomic data
Fanny Berglund, Nachiket Marathe, Tobias Österlund, Johan Bengtsson-Palme, Stathis Kotsakis et al.
Microbiome, Journal article 2017
Journal article

Discovery of the fourth mobile sulfonamide resistance gene
Mohammad Razavi, Nachiket Marathe, Michael Gillings, Carl-Fredrik Flach, Erik Kristiansson et al.
Microbiome, Journal article 2017
Journal article

Untreated urban waste contaminates Indian river sediments with resistance genes to last resort antibiotics
Nachiket Marathe, Chandan Pal, Swapnil S. Gaikwad, Viktor Jonsson, Erik Kristiansson et al.
Water Research, Journal article 2017
Journal article

Using metagenomics to investigate human and environmental resistomes.
Johan Bengtsson-Palme, D. G. Joakim Larsson, Erik Kristiansson
The Journal of antimicrobial chemotherapy, Journal article 2017
Journal article

Computational discovery and functional validation of novel fluoroquinolone resistance genes in public metagenomic data sets
Fredrik Boulund, Fanny Berglund, Carl-Fredrik Flach, Johan Bengtsson-Palme, Nachiket Marathe et al.
BMC Genomics, Journal article 2017
Journal article

Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory
R. Henrik Nilsson, Marisol Sánchez-García,, Martin Ryberg, Kessy Abarenkov, Christian Wurzbacher et al.
MycoKeys, Journal article 2017
Journal article

Comparison of four DNA extraction methods for comprehensive assessment of 16S rRNA bacterial diversity in marine biofilms using high-throughput sequencing
Natàlia Corcoll, Tobias Österlund, Lucas Sinclair, Alexander Eiler, Erik Kristiansson et al.
FEMS Microbiology Letters, Journal article 2017
Journal article

Patient-tailored analysis of minimal residual disease in acute myeloid leukemia using next generation sequencing.
Erik Malmberg, Sara Ståhlman, Anna Rehammar, Tore Samuelsson, Sofie J. Alm et al.
European journal of haematology, Journal article 2017
Journal article