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- Tobias Österlund
Tobias Österlund
Researcher
Department of Laboratory-
Digital RNA sequencing using unique molecular identifiers enables ultrasensitive RNA mutation
analysis
Manuel Luna Santa-María, Daniel Andersson, Toshima Z Parris, Khalil Helou, Tobias Österlund, Anders Ståhlberg
COMMUNICATIONS BIOLOGY - 2024 -
Genomic alterations in ovarian endometriosis and subsequently diagnosed ovarian
carcinoma
Anna Linder, S. Westbom-Fremer, C. Mateoiu, Amanda Olsson Widjaja, Tobias Österlund, S. Veerla, Anders Ståhlberg, B. Ulfenborg, Karin Sundfeldt
HUMAN REPRODUCTION - 2024 -
Identification of genomic binding sites and direct target genes for the transcription factor
DDIT3/CHOP
Ayman Osman, Malin Lindén, Tobias Österlund, Christoffer Vannas, Lisa Andersson, Mandy Escobar, Anders Ståhlberg, Pierre Åman
Experimental Cell Research - 2023 -
UMIErrorCorrect and UMIAnalyzer: Software for Consensus Read Generation, Error Correction, and Visualization Using Unique Molecular
Identifiers
Tobias Österlund, Stefan Filges, Gustav Johansson, Anders Ståhlberg
Clinical Chemistry - 2022 -
FET fusion oncoproteins interact with BRD4 and SWI/SNF chromatin remodelling complex subtypes in
sarcoma
Malin Lindén, Christoffer Vannas, Tobias Österlund, Lisa Andersson, Ayman Osman, Mandy Escobar, Henrik Fagman, Anders Ståhlberg, Pierre Åman
Molecular Oncology - 2022 -
FUS-DDIT3 Fusion Oncoprotein Expression Affects JAK-STAT Signaling in Myxoid
Liposarcoma
Soheila Dolatabadi, Emma Jonasson, Lisa Andersson, Manuel Luna Santa-María, Malin Lindén, Tobias Österlund, Pierre Åman, Anders Ståhlberg
Frontiers in Oncology - 2022 -
Monitoring circulating tumor DNA during surgical treatment in patients with gastrointestinal stromal
tumors
Gustav Johansson, Marta Berndsen, Stefan Lindskog, Tobias Österlund, Henrik Fagman, Andreas Muth, Anders Ståhlberg
Molecular Cancer Therapeutics - 2021 -
A comprehensive survey of integron-associated genes present in
metagenomes
Mariana Buongermino Pereira, Tobias Österlund, Karl Martin Eriksson, Thomas Backhaus, Marina Axelson-Fisk, Erik Kristiansson
BMC Genomics - 2020 -
Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance
genes
Fanny Berglund, Maria-Elisabeth Böhm, Anton Martinsson, Stefan Ebmeyer, Tobias Österlund, Anna Johnning, D. G. Joakim Larsson, Erik Kristiansson
Microbial genomics - 2020 -
mRNA Expression and Biomarker Responses in Perch at a Biomonitoring Site in the Baltic Sea - Possible Influence of Natural Brominated
Chemicals
Lars Förlin, Noomi Asker, Mats H. Töpel, Tobias Österlund, Erik Kristiansson, Jari Parkkonen, S. Faxneld, Joachim Sturve
Frontiers in Marine Science - 2019 -
Pharmacology beyond the patient - The environmental risks of human
drugs
L. Gunnarsson, J. R. Snapk, B. Verbruggen, S. F. Owen, Erik Kristiansson, L. Margiotta-Casaluci, Tobias Österlund, K. Hutchinson, D. Leverett, B. Marks, C. R. Tyler
Environment International - 2019 -
Identification and reconstruction of novel antibiotic resistance genes from
metagenomes
Fanny Berglund, Tobias Österlund, Fredrik Boulund, Nachiket Marathe, D. G. Joakim Larsson, Erik Kristiansson
Microbiome - 2019 -
Modelling of zero-inflation improves inference of metagenomic gene count
data
Viktor Jonsson, Tobias Österlund, Olle Nerman, Erik Kristiansson
Statistical Methods in Medical Research - 2019 -
Sewage from Airplanes Exhibits High Abundance and Diversity of Antibiotic Resistance
Genes
S. Hess, D. Kneis, Tobias Österlund, B. Li, Erik Kristiansson, T. U. Berendonk
Environmental Science and Technology - 2019 -
ECOdrug: A database connecting drugs and conservation of their targets across
species
B. Verbruggen, L. Gunnarsson, Erik Kristiansson, Tobias Österlund, S. F. Owen, J. R. Snape, C. R. Tyler
Nucleic Acids Research - 2018 -
Comparison of four DNA extraction methods for comprehensive assessment of 16S rRNA bacterial diversity in marine biofilms using high-throughput
sequencing
Natàlia Corcoll, Tobias Österlund, Lucas Sinclair, Alexander Eiler, Erik Kristiansson, Thomas Backhaus, Martin Eriksson
FEMS Microbiology Letters - 2017 -
Identification of 76 novel B1 metallo-beta-lactamases through large-scale screening of genomic and metagenomic
data
Fanny Berglund, Nachiket Marathe, Tobias Österlund, Johan Bengtsson-Palme, Stathis Kotsakis, Carl-Fredrik Flach, D. G. Joakim Larsson, Erik Kristiansson
Microbiome - 2017 -
Variability in Metagenomic Count Data and Its Influence on the Identification of Differentially Abundant
Genes
Viktor Jonsson, Tobias Österlund, Olle Nerman, Erik Kristiansson
Journal of computational biology : a journal of computational molecular cell biology - 2017 -
HirBin: high-resolution identification of differentially abundant functions in
metagenomes
Tobias Österlund, Viktor Jonsson, Erik Kristiansson
BMC Genomics - 2017 -
Statistical evaluation of methods for identification of differentially abundant genes in comparative
metagenomics
Viktor Jonsson, Tobias Österlund, Olle Nerman, Erik Kristiansson
BMC Genomics - 2016 -
Controllability analysis of transcriptional regulatory networks reveals circular control patterns among transcription
factors
Tobias Österlund, Sergio Bordel Velasco, Jens B. Nielsen
Integrative Biology - 2015 -
Improved Production of a Heterologous Amylase in Saccharomyces cerevisiae by Inverse Metabolic
Engineering
Zihe Liu, Lifang Liu, Tobias Österlund, Jin Hou, Mingtao Huang, L. Fagerberg, Dina Petranovic, M. Uhlen, Jens B. Nielsen
Applied and Environmental Microbiology - 2014 -
Genome-scale analysis of the high-efficient protein secretion system of Aspergillus
oryzae
Lifang Liu, Amir Feizi, Tobias Österlund, C. Hjort, Jens B. Nielsen
Bmc Systems Biology - 2014 -
Management of the endoplasmic reticulum stress by activation of the heat shock response in
yeast
Jin Hou, H. T. Tang, Zihe Liu, Tobias Österlund, Jens B. Nielsen, Dina Petranovic
Fems Yeast Research - 2014 -
Reconstruction of Biological Networks for Integrative
Analysis
Tobias Österlund
2014 -
A novel method for cross-species gene expression
analysis
Erik Kristiansson, Tobias Österlund, Lina-Maria Gunnarsson, Gabriella Arne, D. G. Joakim Larsson, Olle Nerman
BMC Bioinformatics - 2013 -
Heat shock response improves heterologous protein secretion in Saccharomyces
cerevisiae
Jin Hou, Tobias Österlund, Zihe Liu, Dina Petranovic, Jens B. Nielsen
Applied Microbiology and Biotechnology - 2013 -
Genome-Scale Modeling of the Protein Secretory Machinery in
Yeast
Amir Feizi, Tobias Österlund, Dina Petranovic, Sergio Bordel Velasco, Jens B. Nielsen
PLoS ONE - 2013 -
Mapping condition-dependent regulation of metabolism in yeast through genome-scale
modeling
Tobias Österlund, Intawat Nookaew, Sergio Bordel Velasco, Jens B. Nielsen
BMC Systems Biology - 2013 -
Anaerobic alpha-Amylase Production and Secretion with Fumarate as the Final Electron Acceptor in Saccharomyces
cerevisiae
Zihe Liu, Tobias Österlund, Jin Hou, Dina Petranovic, Jens B. Nielsen
Applied and Environmental Microbiology - 2013 -
Fifteen years of large scale metabolic modeling of yeast: Developments and
impacts
Tobias Österlund, Intawat Nookaew, Jens B. Nielsen
Biotechnology Advances - 2012