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Erik Kristiansson
Professor
Applied Mathematics and StatisticsAbout Erik Kristiansson
My research focuses on analysis of quantitative data with applications in molecular biology and medicine.
More information about me and my research group is available at http://bioinformatics.math.chalmers.se/erikkristiansson/erikkristiansson.html
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The transfer of antibiotic resistance genes between evolutionary distant
bacteria
Marcos Parras-Moltó, David Lund, Stefan Ebmeyer, D. G. Joakim Larsson, Anna Johnning, Erik Kristiansson
bioRxiv - 2024 -
Genetic compatibility and ecological connectivity drive the dissemination of antibiotic resistance
genes
David Lund, Marcos Parras-Moltó, Juan Salvador Inda Díaz, Stefan Ebmeyer, D. G. Joakim Larsson, Anna Johnning, Erik Kristiansson
bioRxiv - 2024 -
Environmental concentrations of the fungicide tebuconazole alter microbial biodiversity and trigger biofilm-released transformation
products
Daniela Gómez-Martínez, Mary A. Selvin, Anders K. Nilsson, Eric Carmona, Judith Sorel Ngou, Erik Kristiansson, R. Henrik Nilsson, Natàlia Corcoll
Chemosphere - 2024 -
Transformers enable accurate prediction of acute and chronic chemical toxicity in aquatic
organisms
Mikael Gustavsson, Styrbjörn Käll, Patrik Svedberg, Juan Salvador Inda Díaz, Sverker Molander, Jessica Coria, Thomas Backhaus, Erik Kristiansson
Sciences Advances - 2024 -
Evidence for wastewaters as environments where mobile antibiotic resistance genes
emerge
Fanny Berglund, Stefan Ebmeyer, Erik Kristiansson, D. G. Joakim Larsson
Communications Biology - 2023 -
Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental
microbiomes
Juan Salvador Inda Díaz, David Lund, Marcos Parras-Moltó, Anna Johnning, Johan Bengtsson-Palme, Erik Kristiansson
Microbiome - 2023 -
Extensive screening reveals previously undiscovered aminoglycoside resistance genes in human
pathogens
David Lund, Roelof Dirk Coertze, Marcos Parras-Moltó, Fanny Berglund, Carl-Fredrik Flach, Anna Johnning, D. G. Joakim Larsson, Erik Kristiansson
Communications Biology - 2023 -
Phenotypic and transcriptomic acclimation of the green microalga Raphidocelis subcapitata to high environmental levels of the herbicide
diflufenican
Daniela Gómez-Martínez, Johanna Bengtson, Anders K. Nilsson, Adrian K Clarke, R. Henrik Nilsson, Erik Kristiansson, Natàlia Corcoll
Science of the Total Environment - 2023 -
Dataset on aquatic ecotoxicity predictions of 2697 chemicals, using three quantitative structure-activity relationship
platforms
Patrik Svedberg, Pedro Inostroza, Mikael Gustavsson, Erik Kristiansson, Francis Spilsbury, Thomas Backhaus
Data in Brief - 2023 -
Risk assessment of chemicals and their mixtures are hindered by scarcity and inconsistencies between different environmental exposure
limits
Mikael Gustavsson, S. Molander, Thomas Backhaus, Erik Kristiansson
Environmental Research - 2023 -
Strain-level bacterial typing directly from patient samples using optical DNA
mapping
M. Nyblom, Anna Johnning, K. Frykholm, M. Wrande, V. Mnller, G. Goyal, M. Robertsson, A. Dvirnas, T. Sewunet, K. K. Sriram, T. Ambjornsson, C. G. Giske, L. Sandegren, Erik Kristiansson, F. Westerlund
Communications Medicine - 2023 -
The curse of the uncultured
fungus
Kessy Abarenkov, Erik Kristiansson, Martin Ryberg, Sandra Nogal-Prata, Daniela Gómez-Martínez, Katrin Stüer-Patowsky, Tobias Jansson, Sergei Palme, Masoomeh Ghobad-Nejhad, Natàlia Corcoll, Ruud Scharn, Marisol Sánchez-García, Maryia Khomich, Christian Wurzbacher, R. Henrik Nilsson
MycoKeys - 2022 -
Estimating the release of chemical substances from consumer products, textiles and pharmaceuticals to
wastewater
M Gustavsson, S. Molander, Thomas Backhaus, Erik Kristiansson
Chemosphere - 2022 -
Economic interests cloud hazard reductions in the European regulation of substances of very high
concern
Jessica Coria, Erik Kristiansson, Mikael Gustavsson
Nature Communications - 2022 -
Large-scale characterization of the macrolide resistome reveals high diversity and several new pathogen-associated
genes
David Lund, Nicolas Kieffer, Marcos Parras-Moltó, Stefan Ebmeyer, Fanny Berglund, Anna Johnning, D. G. Joakim Larsson, Erik Kristiansson
Microbial genomics - 2022 -
The impact of the ST131 clone on recurrent ESBL-producing E. coli urinary tract infection: a prospective comparative
study
Anna Lindblom, C. Kiszakiewicz, Erik Kristiansson, Shora Yazdanshenas, N. Kamenska, Nahid Karami, Christina Åhrén
Scientific Reports - 2022 -
GEnView: a gene-centric, phylogeny-based comparative genomics pipeline for bacterial genomes and
plasmids
Stefan Ebmeyer, Roelof Dirk Coertze, Fanny Berglund, Erik Kristiansson, D. G. Joakim Larsson
Bioinformatics - 2022 -
An updated phylogeny of the
metallo-β-lactamases.
Fanny Berglund, Anna Johnning, D. G. Joakim Larsson, Erik Kristiansson
The Journal of antimicrobial chemotherapy - 2021 -
Does the scientific knowledge reflect the chemical diversity of environmental pollution? – A twenty-year
perspective
Erik Kristiansson, Jessica Coria, Lina Gunnarsson, Mikael Gustavsson
Environmental Science and Policy - 2021 -
Detection of structural variations in densely-labelled optical DNA barcodes: A hidden Markov model
approach
A. Dvirnas, C. Stewart, V. Muller, S. K. Bikkarolla, K. Frykholm, L. Sandegren, Erik Kristiansson, F. Westerlund, T. Ambjornsson
PLoS ONE - 2021 -
SMAD4 haploinsufficiency in small intestinal neuroendocrine
tumors
Tobias Hofving, Erik Elias, Anna Rehammar, Linda Inge, Gülay Altiparmak, Marta Persson, Erik Kristiansson, Martin E Johansson, Ola Nilsson, Yvonne Arvidsson
BMC Cancer - 2021 -
A framework for identifying the recent origins of mobile antibiotic resistance
genes
Stefan Ebmeyer, Erik Kristiansson, D. G. Joakim Larsson
Communications Biology - 2021 -
A comprehensive survey of integron-associated genes present in
metagenomes
Mariana Buongermino Pereira, Tobias Österlund, Karl Martin Eriksson, Thomas Backhaus, Marina Axelson-Fisk, Erik Kristiansson
BMC Genomics - 2020 -
MYO5B mutations in pheochromocytoma/paraganglioma promote cancer
progression
Tajana Tesan Tomic, Josefin Olausson, Anna Rehammar, Lily Deland, Andreas Muth, K. Ejeskar, Staffan Nilsson, Erik Kristiansson, Olof Nilsson Wassén, Frida Abel
Plos Genetics - 2020 -
When mycologists describe new species, not all relevant information is provided (clearly
enough).
Louisa Durkin, Tobias Jansson, Marisol Sanchez, Maryia Khomich, Martin Ryberg, Erik Kristiansson, R. Henrik Nilsson
MycoKeys - 2020 -
Cultivation-Free Typing of Bacteria Using Optical DNA
Mapping
Vilhelm Müller, M. Nyblom, Anna Johnning, M. Wrande, A. Dvirnas, K. K. Sriram, C. G. Giske, T. Ambjornsson, L. Sandegren, Erik Kristiansson, F. Westerlund
Acs Infectious Diseases - 2020 -
Discovery of Species-unique Peptide Biomarkers of Bacterial Pathogens by Tandem Mass Spectrometry-based
Proteotyping
Roger Karlsson, Annika Thorsell, M. Gomila, Francisco Salvà-Serra, Hedvig E Jakobsson, Lucia Gonzales-Siles, Daniel Jaén-Luchoro, Susann Skovbjerg, Johannes Fuchs, A. Karlsson, F. Boulund, Anna Johnning, Erik Kristiansson, Edward R.B. Moore
Molecular & Cellular Proteomics - 2020 -
The association between insertion sequences and antibiotic resistance
genes
Mohammad Razavi, Erik Kristiansson, Carl-Fredrik Flach, D. G. Joakim Larsson
mSphere - 2020 -
Predicting clinical resistance prevalence using sewage metagenomic
data
Antti Karkman, Fanny Berglund, Carl-Fredrik Flach, Erik Kristiansson, D. G. Joakim Larsson
Communications Biology - 2020 -
Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance
genes
Fanny Berglund, Maria-Elisabeth Böhm, Anton Martinsson, Stefan Ebmeyer, Tobias Österlund, Anna Johnning, D. G. Joakim Larsson, Erik Kristiansson
Microbial genomics - 2020 -
Structural and biochemical characterization of the environmental MBLs MYO-1, ECV-1 and
SHD-1.
Christopher Fröhlich, Vidar Sørum, Sandra Huber, Ørjan Samuelsen, Fanny Berglund, Erik Kristiansson, Stathis Kotsakis, Nachiket Marathe, D. G. Joakim Larsson, Hanna-Kirsti S Leiros
The Journal of antimicrobial chemotherapy - 2020 -
The mobile FOX AmpC beta-lactamases originated in Aeromonas
allosaccharophila
Stefan Ebmeyer, Erik Kristiansson, D. G. Joakim Larsson
International Journal of Antimicrobial Agents - 2019 -
Patient-Tailored Deep Sequencing of Peripheral Blood Enables Early Detection of Relapse in Childhood Acute Myeloid
Leukemia
KL Juul-Dam, Erik Delsing Malmberg, Anna Rehammar, Erik Kristiansson, Jonas Abrahamsson, A Aggerholm, MM Dirdal, Kirsi Jahnukainen, Birgitte Lausen, HB Ommen, Henrik Hasle, Linda Fogelstrand
Blood Vpl 134 Suppl 1 1456 - 2019 -
Introducing ribosomal tandem repeat barcoding for
fungi
Christian Wurzbacher, Ellen Larsson, Johan Bengtsson-Palme, Silke Van den Wyngaert, Sten Svantesson, Erik Kristiansson, Maiko Kagami, R. Henrik Nilsson
Molecular Ecology Resources - 2019 -
mRNA Expression and Biomarker Responses in Perch at a Biomonitoring Site in the Baltic Sea - Possible Influence of Natural Brominated
Chemicals
Lars Förlin, Noomi Asker, Mats H. Töpel, Tobias Österlund, Erik Kristiansson, Jari Parkkonen, S. Faxneld, Joachim Sturve
Frontiers in Marine Science - 2019 -
Pharmacology beyond the patient - The environmental risks of human
drugs
L. Gunnarsson, J. R. Snapk, B. Verbruggen, S. F. Owen, Erik Kristiansson, L. Margiotta-Casaluci, Tobias Österlund, K. Hutchinson, D. Leverett, B. Marks, C. R. Tyler
Environment International - 2019 -
Identification and reconstruction of novel antibiotic resistance genes from
metagenomes
Fanny Berglund, Tobias Österlund, Fredrik Boulund, Nachiket Marathe, D. G. Joakim Larsson, Erik Kristiansson
Microbiome - 2019 -
177Lu-octreotate therapy for neuroendocrine tumours is enhanced by Hsp90
inhibition
Tobias Hofving, Viktor Sandblom, Yvonne Arvidsson, Emman Shubbar, Gülay Altiparmak, John Swanpalmer, Bilal Almobarak, Anna-Karin Elf, Viktor Johanson, Erik Elias, Erik Kristiansson, Eva Forssell-Aronsson, Ola Nilsson
Endocrine-Related Cancer - 2019 -
Modelling of zero-inflation improves inference of metagenomic gene count
data
Viktor Jonsson, Tobias Österlund, Olle Nerman, Erik Kristiansson
Statistical Methods in Medical Research - 2019 -
Accurate and Sensitive Analysis of Minimal Residual Disease in Acute Myeloid Leukemia Using Deep Sequencing of Single Nucleotide
Variations.
Erik Malmberg, Anna Rehammar, Mariana Buongermino Pereira, Jonas Abrahamsson, Tore Samuelsson, Sara Ståhlman, Julia Asp, Anne Tierens, Lars Palmqvist, Erik Kristiansson, Linda Fogelstrand
The Journal of molecular diagnostics : JMD - 2019 -
The PER extended-spectrum beta-lactamases originate from Pararheinheimera
sp.
Stefan Ebmeyer, Erik Kristiansson, D. G. Joakim Larsson
International journal of antimicrobial agents - 2019 -
Sewage from Airplanes Exhibits High Abundance and Diversity of Antibiotic Resistance
Genes
S. Hess, D. Kneis, Tobias Österlund, B. Li, Erik Kristiansson, T. U. Berendonk
Environmental Science and Technology - 2019 -
Deep Sequencing of Leukemia-specific Mutations in Peripheral Blood Identifies Children with Imminent Relapse of Acute Myeloid
Leukemia
KL Juul-Dam, Erik Delsing Malmberg, Anna Rehammar, Erik Kristiansson, Jonas Abrahamsson, A Aggerholm, MM Dirdal, Kirsi Jahnukainen, Birgitte Lausen, HB Ommen, Henrik Hasle, Linda Fogelstrand
NOPHO Annual Meeting 2019 - 2019 -
CMY-1/MOX-family AmpC β-lactamases MOX-1, MOX-2 and MOX-9 were mobilized independently from three Aeromonas
species.
Stefan Ebmeyer, Erik Kristiansson, D. G. Joakim Larsson
The Journal of antimicrobial chemotherapy - 2019 -
Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance
genes
Nachiket Marathe, Fanny Berglund, Mohammad Razavi, Chandan Pal, Johannes Dröge, S. Samant, Erik Kristiansson, D. G. Joakim Larsson
Microbiome - 2019 -
Selective concentration for ciprofloxacin resistance in Escherichia coli grown in complex aquatic bacterial
biofilms
Nadine Kraupner, Stefan Ebmeyer, Johan Bengtsson-Palme, J. Fick, Erik Kristiansson, Carl-Fredrik Flach, D. G. Joakim Larsson
Environment International - 2018 -
The resistomes of six carbapenem-resistant pathogens - a critical genotype-phenotype
analysis
Anna Johnning, Nahid Karami, Erika Tång Hallbäck, V. Muller, L. Nyberg, Mariana Buongermino Pereira, C. Stewart, T. Ambjornsson, F. Westerlund, Ingegerd Adlerberth, Erik Kristiansson
Microbial Genomics - 2018 -
The neuroendocrine phenotype, genomic profile and therapeutic sensitivity of GEPNET cell
lines
Tobias Hofving, Yvonne Arvidsson, Bilal Almobarak, Linda Inge, R. Pfragner, Marta Persson, Göran Stenman, Erik Kristiansson, Viktor Johanson, Ola Nilsson
Endocrine-Related Cancer - 2018 -
Facilitated sequence assembly using densely labeled optical DNA barcodes: A combinatorial auction
approach
A. Dvirnas, C. Pichler, C. L. Stewart, S. Quaderi, L. K. Nyberg, V. Muller, S. K. Bikkarolla, Erik Kristiansson, L. Sandegren, F. Westerlund, T. Ambjornsson
Plos One - 2018 -
Environmental factors influencing the development and spread of antibiotic
resistance
Johan Bengtsson-Palme, Erik Kristiansson, D. G. Joakim Larsson
FEMS microbiology reviews - 2018 -
Proteotyping bacteria: Characterization, differentiation and identification of pneumococcus and other species within the Mitis Group of the genus Streptococcus by tandem mass spectrometry
proteomics
Roger Karlsson, Lucia Gonzales-Siles, M. Gomila, A. Busquets, Francisco Salvà-Serra, Daniel Jaén-Luchoro, Hedvig E Jakobsson, A. Karlsson, Fredrik Boulund, Erik Kristiansson, Edward R.B. Moore
Plos One - 2018 -
miRNA profiling of small intestinal neuroendocrine tumors defines novel molecular subtypes and identifies miR-375 as a biomarker of patient
survival
Yvonne Arvidsson, Anna Rehammar, Anders Bergström, Ellinor Andersson, Gülay Altiparmak, Christina Swärd, Bo Wängberg, Erik Kristiansson, Ola Nilsson
Modern Pathology - 2018 -
Functional metagenomics reveals a novel carbapenem-hydrolyzing mobile beta-lactamase from Indian river sediments contaminated with antibiotic production
waste
Nachiket Marathe, Anders Janzon, Stathis Kotsakis, Carl-Fredrik Flach, Mohammad Razavi, Fanny Berglund, Erik Kristiansson, D. G. Joakim Larsson
Environment International - 2018 -
Comparison of normalization methods for the analysis of metagenomic gene abundance
data
Mariana Buongermino Pereira, Mikael Wallroth, Viktor Jonsson, Erik Kristiansson
BMC Genomics - 2018 -
ECOdrug: A database connecting drugs and conservation of their targets across
species
B. Verbruggen, L. Gunnarsson, Erik Kristiansson, Tobias Österlund, S. F. Owen, J. R. Snape, C. R. Tyler
Nucleic Acids Research - 2018 -
Comparison of four DNA extraction methods for comprehensive assessment of 16S rRNA bacterial diversity in marine biofilms using high-throughput
sequencing
Natàlia Corcoll, Tobias Österlund, Lucas Sinclair, Alexander Eiler, Erik Kristiansson, Thomas Backhaus, Martin Eriksson
FEMS Microbiology Letters - 2017 -
Computational and Statistical Considerations in the Analysis of Metagenomic
Data
Fredrik Boulund, Mariana Buongermino Pereira, Viktor Jonsson, Erik Kristiansson
Metagenomics: Perspectives, Methods, and Applications - 2017 -
Discovery of the fourth mobile sulfonamide resistance
gene
Mohammad Razavi, Nachiket Marathe, Michael Gillings, Carl-Fredrik Flach, Erik Kristiansson, D. G. Joakim Larsson
Microbiome - 2017 -
Untreated urban waste contaminates Indian river sediments with resistance genes to last resort
antibiotics
Nachiket Marathe, Chandan Pal, Swapnil S. Gaikwad, Viktor Jonsson, Erik Kristiansson, D. G. Joakim Larsson
Water Research - 2017 -
Identification of 76 novel B1 metallo-beta-lactamases through large-scale screening of genomic and metagenomic
data
Fanny Berglund, Nachiket Marathe, Tobias Österlund, Johan Bengtsson-Palme, Stathis Kotsakis, Carl-Fredrik Flach, D. G. Joakim Larsson, Erik Kristiansson
Microbiome - 2017 -
Using metagenomics to investigate human and environmental
resistomes.
Johan Bengtsson-Palme, D. G. Joakim Larsson, Erik Kristiansson
The Journal of antimicrobial chemotherapy - 2017 -
Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry
Proteomics
Fredrik Boulund, Roger Karlsson, L. Gonzales-Siles, Anna Johnning, N. Karami, O. Al-Bayati, C. Ahren, Edward R.B. Moore, Erik Kristiansson
Molecular & Cellular Proteomics - 2017 -
Variability in Metagenomic Count Data and Its Influence on the Identification of Differentially Abundant
Genes
Viktor Jonsson, Tobias Österlund, Olle Nerman, Erik Kristiansson
Journal of computational biology : a journal of computational molecular cell biology - 2017 -
Does antifouling paint select for antibiotic
resistance?
Carl-Fredrik Flach, Chandan Pal, Carl Johan Svensson, Erik Kristiansson, Marcus Östman, Johan Bengtsson-Palme, Mats Tysklind, D. G. Joakim Larsson
The Science of the total environment - 2017 -
Computational discovery and functional validation of novel fluoroquinolone resistance genes in public metagenomic data
sets
Fredrik Boulund, Fanny Berglund, Carl-Fredrik Flach, Johan Bengtsson-Palme, Nachiket Marathe, D. G. Joakim Larsson, Erik Kristiansson
BMC Genomics - 2017 -
Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near
satisfactory
R. Henrik Nilsson, Marisol Sánchez-García,, Martin Ryberg, Kessy Abarenkov, Christian Wurzbacher, Erik Kristiansson
MycoKeys - 2017 -
Patient-tailored analysis of minimal residual disease in acute myeloid leukemia using next generation
sequencing.
Erik Malmberg, Sara Ståhlman, Anna Rehammar, Tore Samuelsson, Sofie J. Alm, Erik Kristiansson, Jonas Abrahamsson, Hege Garelius, Louise Pettersson, Mats Ehinger, Lars Palmqvist, Linda Fogelstrand
European journal of haematology - 2017 -
HirBin: high-resolution identification of differentially abundant functions in
metagenomes
Tobias Österlund, Viktor Jonsson, Erik Kristiansson
BMC Genomics - 2017 -
Proteotyping for Rapid Identifications of Clinically-Relevant Infectious
Bacteria
Francisco Salvà-Serra, Hedvig E Jakobsson, Lucia Gonzales-Siles, Roger Karlsson, Fredrik Boulund, Daniel Jaén-Luchoro, A Bennasar-Figueras, Erik Kristiansson, Edward R.B. Moore
Programme of the XXXV ECCO Meeting 2016 - 2016 -
Top 50 most wanted
fungi
R. Henrik Nilsson, Christian Wurzbacher, Mohammad Bahram, Victor R. M. Coimbra, Ellen Larsson, Leho Tedersoo, Jonna S. Eriksson, Camila Duarte, Sten Svantesson, Marisol Sánchez-García, Martin Ryberg, Erik Kristiansson, Kessy Abarenkov
MycoKeys - 2016 -
Draft Genome Sequence of Extended-Spectrum-β-Lactamase-Producing Escherichia coli Strain CCUG 62462, Isolated from a Urine
Sample.
Anna Johnning, Hedvig E Jakobsson, Fredrik Boulund, Francisco Salvà-Serra, Edward R.B. Moore, Christina Åhrén, Nahid Karami, Erik Kristiansson
Genome Announcements - 2016 -
Direct identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA
mapping.
Vilhelm Müller, Fredrika Rajer, Karolin Frykholm, Lena K Nyberg, Saair Quaderi, Joachim Fritzsche, Erik Kristiansson, Tobias Ambjörnsson, Linus Sandegren, Fredrik Westerlund
Scientific reports - 2016 -
New Ph.D. students in the empirical sciences should be recruited into ongoing scientific studies right from the
start
Martin Ryberg, Erik Kristiansson, Christian Wurzbacher, R. Henrik Nilsson
Journal of Brief Ideas - 2016 -
Biomarker responses in eelpouts from four coastal areas in Sweden, Denmark and
Germany.
Noomi Asker, Eva Albertsson, Emma Wijkmark, Sara Bergek, Jari Parkkonen, Ulrike Kammann, Inger Holmqvist, Erik Kristiansson, Jakob Strand, Jens Gercken, Lars Förlin
Marine environmental research - 2016 -
Draft Genome Sequence of Moraxella catarrhalis Type Strain CCUG
353T.
Hedvig E Jakobsson, Francisco Salvà-Serra, Kaisa Thorell, Lucia Gonzales-Siles, Fredrik Boulund, Roger Karlsson, Per Sikora, Lars Engstrand, Erik Kristiansson, Edward R.B. Moore
Genome Announcements - 2016 -
Elucidating selection processes for antibiotic resistance in sewage treatment plants using
metagenomics
Johan Bengtsson-Palme, Rickard Hammarén, Chandan Pal, Marcus Östman, Berndt Björlenius, Carl-Fredrik Flach, Jerker Fick, Erik Kristiansson, Mats Tysklind, D. G. Joakim Larsson
Science of the Total Environment - 2016 -
The structure and diversity of human, animal and environmental
resistomes
Chandan Pal, Johan Bengtsson-Palme, Erik Kristiansson, D. G. Joakim Larsson
Microbiome - 2016 -
Malignant pheochromocytomas/paragangliomas harbor mutations in transport and cell adhesion
genes.
Annica Wilzén, Anna Rehammar, Andreas Muth, Ola Nilsson, Tajana Tesan Tomic, Bo Wängberg, Erik Kristiansson, Frida Abel
International journal of cancer - 2016 -
Proteotyping of Streptococcus pneumoniae, using tandem mass spectrometry for identification of biomarkers for species and strain
differentiation
Hedvig E Jakobsson, Lucia Gonzales-Siles, Roger Karlsson, Fredrik Boulund, Francisco Salvà-Serra, Erik Kristiansson, Edward R.B. Moore
11th International Meeting on Microbial Epidemiological Markers (IMMEM XI) 9 - 12 March 2016, Estoril, Portugal - 2016 -
Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg,
Sweden)
Kessy Abarenkov, Rachel I. Adams, Irinyi Laszlo, Ahto Agan, Elia Ambrosio, Alexandre Antonelli, Mohammad Bahram, Johan Bengtsson-Palme, Gunilla Bok, Patrik Cangren, Victor R. M. Coimbra, Claudia Coleine, Claes G. R. Gustafsson, Jinhong He, Tobias Hofmann, Erik Kristiansson, Ellen Larsson, Tomas Larsson, Yingkui Liu, Svante Martinsson, Wieland Meyer, Marina Panova, Nuttapon Pombubpa, Camila Ritter, Martin Ryberg, Sten Svantesson, Ruud Scharn, Ola Svensson, Mats H. Töpel, Martin Unterseher, Cobus Visagie, Christian Wurzbacher, Andy F.S. Taylor, Urmas Kõljalg, Lynn Schriml, R. Henrik Nilsson
MycoKeys - 2016 -
Mass Spectrometry Proteotyping for detection, identification characterization and diagnostics of infectious bacteria in clinical respiratory-tract
samples
Lucia Gonzales-Siles, Roger Karlsson, C van Houten, L Bont, Fredrik Boulund, Erik Kristiansson, Edward R.B. Moore
11th International Meeting on Microbial Epidemiological Markers (IMMEM XI) 9 - 12 March 2016, Estoril, Portugal - 2016 -
Mass Spectrometry Proteotyping of Streptococcus pneumoniae and commensal Streptococcus: identification of biomarkers for infectious strain
characterization
Lucia Gonzales-Siles, Roger Karlsson, Fredrik Boulund, Hedvig E Jakobsson, Francisco Salvà-Serra, M Gomila, A Bousquets, Erik Kristiansson, Edward R.B. Moore
26th ECCMID 2016 Amsterdam, The Netherlands. 9 - 12 April 2016 - 2016 -
PROTEOTYPING: Tandem Mass Spectrometry Proteomics and Whole Genome Sequence-Based Diagnostics of Infectious Bacteria is Depedent upon a Reliable and Comprehensive Systematic
Framework
Edward R.B. Moore, Lucia Gonzales-Siles, Francisco Salvà-Serra, Hedvig E Jakobsson, Fredrik Boulund, Erik Kristiansson, Roger Karlsson
Third Meeting on “Microbial Systematics and Metagenomics”. Bergey’s International Society for Microbial Systematics (BISMiS). September 12 - 15, 2016, Pune, India - 2016 -
HattCI: Fast and Accurate attC site Identification Using Hidden Markov
Models
Mariana Buongermino Pereira, Mikael Wallroth, Erik Kristiansson, Marina Axelson-Fisk
Journal of Computational Biology - 2016 -
Expression profiling of small intestinal neuroendocrine tumors identifies subgroups with clinical relevance, prognostic markers and therapeutic
targets.
Ellinor Andersson, Yvonne Arvidsson, Christina Swärd, Tobias Hofving, Bo Wängberg, Erik Kristiansson, Ola Nilsson
Modern Pathology - 2016 -
Statistical evaluation of methods for identification of differentially abundant genes in comparative
metagenomics
Viktor Jonsson, Tobias Österlund, Olle Nerman, Erik Kristiansson
BMC Genomics - 2016 -
Metagenomic Sequencing of Marine Periphyton: Taxonomic and Functional Insights into Biofilm
Communities
Kemal Sanli, Johan Bengtsson-Palme, R. Henrik Nilsson, Erik Kristiansson, Magnus Alm Rosenblad, Hans Blanck, Karl Martin Eriksson
Frontiers in Microbiology - 2015 -
Patient-Tailored Analysis of Minimal Residual Disease in Acute Myeloid Leukemia Using Next Generation
Sequencing
Erik Malmberg, Sara Ståhlman, Anna Rehammar, Tore Samuelsson, Sofie J. Alm, Erik Kristiansson, Jonas Abrahamsson, Garelius Hege, Lars Palmqvist, Linda Fogelstrand
Blood. 57th ASH Annual Meeting and Exposition. Orlando, FL, USA. December 5-8, 2015 - 2015 -
Proteotyping: Proteomic characterization, classification and identification of microorganisms - A
prospectus
R. Karlsson, Lucia Gonzales-Siles, Fredrik Boulund, Liselott Svensson-Stadler, Susann Skovbjerg, A. Karlsson, M. Davidson, Stefan Hulth, Erik Kristiansson, Edward R.B. Moore
Systematic and Applied Microbiology - 2015 -
Resistance Mutations in gyrA and parC are Common in Escherichia Communities of both Fluoroquinolone-Polluted and Uncontaminated Aquatic
Environments
Anna Johnning, Erik Kristiansson, Jerker Fick, Birgitta Weijdegård, D. G. Joakim Larsson
Frontiers in Microbiology - 2015 -
Quinolone resistance mutations in the faecal microbiota of Swedish travellers to
India
Anna Johnning, Erik Kristiansson, M. Angelin, Nachiket Marathe, Y. S. Shouche, A. Johansson, D. G. Joakim Larsson
BMC Microbiology - 2015 -
Isolation of novel IncA/C and IncN fluoroquinolone resistance plasmids from an antibiotic-polluted
lake
Carl-Fredrik Flach, Anna Johnning, Ida Nilsson, Kornelia Smalla, Erik Kristiansson, D. G. Joakim Larsson
Journal of Antimicrobial Chemotherapy - 2015 -
Optical mapping of single DNA molecules in nanochannels: A novel method for identification and characterization of antibiotic
resistance
Lena Nyberg, Gustav Emilsson, A. Nilsson, E. Lagerstedt, C. Noble, Liselott Svensson-Stadler, Nahid Karami, Fei Sjöberg, Edward R.B. Moore, Joachim Fritzsche, Erik Kristiansson, T. Ambjörnsson, Fredrik Westerlund
18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014 - 2015 -
The human gut microbiome as a transporter of antibiotic resistance genes between
continents
Johan Bengtsson-Palme, Martin Angelin, Mikael Huss, Sanela Kjellqvist, Erik Kristiansson, Helena Palmgren, D. G. Joakim Larsson, Anders Johansson
Antimicrobial Agents and Chemotherapy - 2015 -
Tentacle: distributed quantification of genes in
metagenomes
Fredrik Boulund, Anders Sjögren, Erik Kristiansson
GigaScience - 2015 -
Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection
potential
Chandan Pal, Johan Bengtsson-Palme, Erik Kristiansson, D. G. Joakim Larsson
BMC Genomics - 2015 -
A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing
efforts
R. Henrik Nilsson, Leho Tedersoo, Martin Ryberg, Erik Kristiansson, Martin Hartmann, Martin Unterseher, Teresita M. Porter, Johan Bengtsson-Palme, Donald M. Walker, Filipe de Sousa, Hannes Andres Gamper, Ellen Larsson, Karl-Henrik Larsson, Urmas Kõljalg, Robert C. Edgar, Kessy Abarenkov
Microbes and Environments - 2015 -
Waterborne beclomethasone dipropionate affects the physiology of fish while its metabolite beclomethasone is not taken
up
Bethanie Carney Almroth, Lina-Maria Gunnarsson, Filip Cuklev Stern, Fick Jerker, Erik Kristiansson, D. G. Joakim Larsson
Science of the Total Environment - 2015 -
Genetic Copy Number Variations in Colon Mucosa Indicating Risk for Colorectal
Cancer.
Annika Gustafsson Asting, Kristina Lagerstedt, Erik Kristiansson, Christina Lönnroth, Marianne Andersson, Elham Rekabdar, Elisabeth Hansson, Ulf Kressner, Fredrik Enlund, Kent Lundholm
Journal of Cancer Therapy - 2014 -
Fluoroquinolones and qnr genes in sediment, well water, soil and human fecal flora in an Indian environment polluted by drug
manufacturing
Carolin Rutgersson, Jerker Fick, Nachiket Marathe, Erik Kristiansson, Anders Janzon, Martin Angelin, Anders Johansson, Yogesh Shouche, Carl-Fredrik Flach, D. G. Joakim Larsson
Environmental Science and Technology - 2014 -
BacMet: antibacterial biocide and metal resistance genes
database
Chandan Pal, Johan Bengtsson-Palme, Christopher Rensing, Erik Kristiansson, D. G. Joakim Larsson
Nucleic Acids Research - 2014 -
Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in
India
Johan Bengtsson-Palme, Fredrik Boulund, Jerker Fick, Erik Kristiansson, D. G. Joakim Larsson
Frontiers in Microbiology - 2014 -
Assessing variation in the potential susceptibility of fish to pharmaceuticals, considering evolutionary differences in their physiology and
ecology
A. R. Brown, L. Gunnarsson, Erik Kristiansson, C. R. Tyler
Philosophical Transactions of the Royal Society B-Biological Sciences - 2014 -
A novel method for cross-species gene expression
analysis
Erik Kristiansson, Tobias Österlund, Lina-Maria Gunnarsson, Gabriella Arne, D. G. Joakim Larsson, Olle Nerman
BMC Bioinformatics - 2013 -
Expression of the glucocorticoid receptor is decreased in experimental Staphylococcus aureus
sepsis.
Maria Bergquist, Merja Nurkkala, Christian Rylander, Erik Kristiansson, Göran Hedenstierna, Catharina Lindholm
The Journal of infection - 2013 -
Acquired genetic mechanisms of a multiresistant bacterium isolated from a treatment plant receiving wastewater from antibiotic
production.
Anna Johnning, Edward R.B. Moore, Liselott Svensson-Stadler, Yogesh S Shouche, D. G. Joakim Larsson, Erik Kristiansson
Applied and environmental microbiology - 2013 -
Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing
data
Johan Bengtsson-Palme, Martin Ryberg, Martin Hartmann, Sara Branco, Zheng Wang, Anna Godhe, Pierre De Wit, Marisol Sánchez-García, Ingo Ebersberger, Filipe de Sousa, Anthony S. Amend, Ari Jumpponen, Martin Unterseher, Erik Kristiansson, Kessy Abarenkov, Yann Bertrand, Kemal Sanli, Karl Martin Eriksson, Unni Vik, Vilmar Veldre, R. Henrik Nilsson
Methods in Ecology and Evolution - 2013 -
Gastrointestinal stromal tumors (GISTs) express somatostatin receptors and bind radiolabeled somatostatin
analogs.
Gabriella Arne, Bengt E Nilsson, Johanna Dalmo, Erik Kristiansson, Yvonne Arvidsson, Eva Forssell-Aronsson, Ola Nilsson, Håkan Ahlman
Acta oncologica (Stockholm, Sweden) - 2013 -
Incorporating molecular data in fungal systematics: a guide for aspiring
researchers
Kevin D. Hyde, Dhanushka Udayanga, Dimuthu S. Manamgoda, Leho Tedersoo, Ellen Larsson, Kessy Abarenkov, Yann Bertrand, Bengt Oxelman, Martin Hartmann, Håvard Kauserud, Martin Ryberg, Erik Kristiansson, R. Henrik Nilsson
Current Research in Environmental and Applied Mycology - 2013 -
ERBB3 is a marker of a ganglioneuroblastoma/ganglioneuroma-like expression profile in neuroblastic
tumours.
Annica Wilzén, Cecilia Krona, Baldur Sveinbjörnsson, Erik Kristiansson, Daniel Dalevi, Ingrid Ora, Katleen De Preter, Raymond L Stallings, John Maris, Rogier Versteeg, Staffan Nilsson, Per Kogner, Frida Abel
Molecular cancer - 2013 -
Functional verification of computationally predicted qnr
genes
Carl-Fredrik Flach, Fredrik Boulund, Erik Kristiansson, D. G. Joakim Larsson
Annals of Clinical Microbiology and Antimicrobials - 2013 -
High levels of quinolone resistance genes found near a waste water treatment plant serving antibiotic
manufacturers
Carolin Rutgersson, Carl-Fredrik Flach, Nachiket Marathe, Erik Kristiansson, Anders Janzon, J. Fick, Y. Shouche, Edward R.B. Moore, D. G. Joakim Larsson
52nd International Conference on Antimicrobial Agents and Chemotherapy (ICAAC), 9-12 September 2012, San Francisco - 2013 -
Hepatic transcriptome profiling indicates differential mRNA expression of apoptosis and immune related genes in eelpout (Zoarces viviparus) caught at Göteborg harbor,
Sweden
Noomi Asker, Erik Kristiansson, Eva Albertsson, D. G. Joakim Larsson, Lars Förlin
Aquatic Toxicology - 2013 -
Oral exposure to industrial effluent with exceptionally high levels of drugs does not indicate acute toxic effects in
rats
Carolin Rutgersson, Lina-Maria Gunnarsson, J. Fick, Erik Kristiansson, D. G. Joakim Larsson
Environmental Toxicology and Chemistry - 2013 -
Estradiol ameliorates arthritis and protects against systemic bone loss in Staphylococcus aureus infection in
mice
Inger Gjertsson, Erik Kristiansson, Marie Lagerquist, Catharina Lindholm, Hans Carlsten
Arthritis Research & Therapy - 2012 -
Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS
sequences
R. Henrik Nilsson, Leho Tedersoo, Kessy Abarenkov, Martin Ryberg, Erik Kristiansson, Martin Hartmann, Conrad L. Schoch, Johan A. A. Nylander, Johannes Bergsten, Teresita M. Porter, Ari Jumpponen, Parag Vaishampayan, Otso Ovaskainen, Nils Hallenberg, Johan Bengtsson-Palme, Karl Martin Eriksson, Karl-Henrik Larsson, Ellen Larsson, Urmas Kõljalg
MycoKeys - 2012 -
Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS
sequences
R. Henrik Nilsson, L Tedersoo, K Abarenkov, M Ryberg, Erik Kristiansson, M Hartmann, G Schoch, J Nylander, J Bergsten, T Porter, A Jumpponen, P Vaishampayan , O Ovaskainen, N Hallenberg, Johan Bengtsson-Palme, M Eriksson, K-H Larsson, E Larsson, U Kõljalg
MycoKeys - 2012 -
Global hepatic gene expression in rainbow trout exposed to sewage effluents: A comparison of different sewage treatment
technologies
Filip Cuklev, Lina-Maria Gunnarsson, Marija Cvijovic, Erik Kristiansson, Carolin Rutgersson, B. Bjorlenius, D. G. Joakim Larsson
Science of the Total Environment - 2012 -
Comprehensive Analysis of Antibiotic Resistance Genes Using Metagenomic DNA Sequencing: Studies of Contaminated River Sediment, Well Water and Soil Microbial
Communities
Johan Bengtsson, Fredrik Boulund, Jerker Fick, Erik Kristiansson, D. G. Joakim Larsson
SocBiN Bioinformatics Conference 2012, Stockholm, Sweden, 2012-06-11 - 2012 -
A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide
sequences
Fredrik Boulund, Anna Johnning, Mariana Buongermino Pereira, D. G. Joakim Larsson, Erik Kristiansson
BMC Genomics - 2012 -
Comprehensive Analysis of Antibiotic Resistance Genes Using Metagenomic DNA Sequencing: Studies of Contaminated River Sediment, Well Water and Soil Microbial
Communities
Johan Bengtsson, Fredrik Boulund, Jerker Fick, Erik Kristiansson, D. G. Joakim Larsson
ISME14 Conference, Copenhagen, Denmark, 2012-08-20 - 2012 -
Does ketoprofen or diclofenac pose the lowest risk to
fish?
Filip Cuklev, J. Fick, Marija Cvijovic, Erik Kristiansson, Lars Förlin, D. G. Joakim Larsson
Journal of Hazardous Materials - 2012 -
Expression profiling of GIST: CD133 is associated with KIT exon 11 mutations, gastric location, and poor
prognosis.
Gabriella Arne, Erik Kristiansson, Olle Nerman, Lars-Gunnar Kindblom, Håkan Ahlman, Bengt E Nilsson, Ola Nilsson
International journal of cancer. Journal international du cancer - 2011 -
Exploring the metagenomes of environmental antibiotic hotspots to identify resistance factors that we may face in the clinic
tomorrow
D. G. Joakim Larsson, Anders Janzon, Anna Johnning, Nachiket Marathe, Fredrik Boulund, Carolin Rutgersson, Y. Shouche, Edward R.B. Moore, Erik Kristiansson
SETAC Europe 21st Annual Meeting; Ecosystem Protection in a Sustainable World: A challenge for Science and Regulation 15-19 May 2011 - 2011 -
The genome of an extensively drug-resistant bacterium isolated from a wastewater treatment plant receiving effluent from antibiotic
manufacturing
Anna Johnning, Erik Kristiansson, Y. Shouche, Edward R.B. Moore, D. G. Joakim Larsson
SETAC Europe 21st Annual Meeting; Ecosystem Protection in a Sustainable World: A challenge for Science and Regulation 15-19 May 2011 - 2011 -
Environmental microbial communities living under very high antibiotic selection
pressure
Anders Janzon, Erik Kristiansson, D. G. Joakim Larsson
Antimicrobial Resistance in the Environment. Eds. Keen P. , Montforts MH, (in press. Dec 2011) - 2011 -
Environmental Comparative Pharmacology: Theory and
application
Duane Huggett, Lina-Maria Gunnarsson, Erik Kristiansson, D. G. Joakim Larsson
Human Pharmaceuticals in the Environment - Current and Future Perspectives. Eds. Brooks B, Huggett D. - 2011 -
Antibiotika i miljön tros öka risken för spridning av resistensgener mellan
arter.
D. G. Joakim Larsson, Erik Kristiansson
Läkartidningen, Nya Rön - 2011 -
Physiology and mRNA expression in rainbow trout (Oncorhynchus mykiss) after long-term exposure to the new antifoulant
medetomidine.
Anna Lennquist, Noomi Asker, Erik Kristiansson, Adam Brenthel, Björn Thrandur Björnsson, Peter Kling, Maria Hultman, D. G. Joakim Larsson, Lars Förlin
Comparative biochemistry and physiology. Toxicology & pharmacology : CBP - 2011 -
Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance and Gene Transfer
Elements
Erik Kristiansson, J. Fick, Anders Janzon, R. Grabic, Carolin Rutgersson, Birgitta Weijdegård, H. Soderstrom, D. G. Joakim Larsson
Plos One - 2011 -
Diclofenac in fish: Blood plasma levels similar to human therapeutic levels affect global hepatic gene
expression.
Filip Cuklev, Erik Kristiansson, Jerker Fick, Noomi Asker, Lars Förlin, D. G. Joakim Larsson
Environmental toxicology and chemistry / SETAC - 2011 -
Colour and melanophore function in rainbow trout after long term exposure to the new antifoulant
medetomidine
Anna Lennquist, Lena Mårtensson Lindblad, Daniel Hedberg, Erik Kristiansson, Lars Förlin
Chemosphere - 2010 -
Antibiotic-contaminated effluent promotes mobile resistance in environmental
baceria
Erik Kristiansson, J Fick, Anders Janzon, R Grabic, Carolin Rutgersson, Birgitta Weijdegård, S Hanna, D. G. Joakim Larsson
35th Congress of the Federation of European Biochemial Societies (FEBS), Gothenburg, June 26 - July 1, 2010. - 2010 -
An open source chimera checker for the fungal ITS
region
R. Henrik Nilsson, Kessy Abarenkov, Vilmar Veldre, Stephan Nylinder, Pierre De Wit, Sara Brosché, Johan F. Alfredsson, Martin Ryberg, Erik Kristiansson
Molecular Ecology Resources - 2010 -
Whole genome sequencing of a multiresistant bacterium isolated from a wastewater treatment plant receiving effluent from antibiotic drug
manufactureing
Anna Johnning, Erik Kristiansson, Y.S Shouche, Carolin Rutgersson, Edward R.B. Moore, D. G. Joakim Larsson
35th Congress of the Federation of European Biochemical Societies (FEBS), Gothenburg, June 26 - July 1, 2010 - 2010 -
Genes with relevance for early to late progression of colon carcinoma based on combined genomic and transcriptomic information from the same
patients.
Kristina Lagerstedt, Erik Kristiansson, Christina Lönnroth, Marianne Andersson, Britt-Marie Iresjö, Annika Gustafsson Asting, Elisabeth Hansson, Ulf Kressner, Svante Nordgren, Fredrik Enlund, Kent Lundholm
Cancer informatics - 2010 -
Hypoxia stimulates CXCR4 signalling in ileal
carcinoids.
Yvonne Arvidsson, Anders Bergström, Linda Arvidsson, Erik Kristiansson, Håkan Ahlman, Ola Nilsson
Endocrine-related cancer - 2010 -
An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular
ecology
R. Henrik Nilsson, Vilmar Veldre, Martin Hartmann, Martin Unterseher, Anthony Amend, Johannes Bergsten, Erik Kristiansson, Martin Ryberg, Ari Jumpponen, Kessy Abarenkov
Fungal Ecology - 2010 -
Environmental biomonitoring of Zoarces viviparus in combination with large scale gene expression
profiling
Noomi Asker, Erik Kristiansson, D. G. Joakim Larsson
27th Congress of the European Society of Comparative Biochemistry and Physiology, Alessandria, Italy. Sept 5-9, 2010 - 2010 -
An open source chimera checker for the fungal ITS
region
R. Henrik Nilsson, Vilmar Veldre, Kessy Abarenkov, Stephan Nylinder, Pierre De Wit, Sara Brosché, Johan Alfredsson, Martin Ryberg, Erik Kristiansson
9th International Mycological Congress, Edinburgh, UK - 2010 -
Exploring the microbial resistome in river sediments exposed to extraordinary high levels of
antibiotics
Anders Janzon, Carolin Rutgersson, Erik Kristiansson, Edward R.B. Moore, D. G. Joakim Larsson
35th FEBS Congress: Molecules of Life - 2010 -
Dose-response effects on global hepatic gene expression in rainbow trout exposed to
diclofenac
Filip Cuklev, Erik Kristiansson, Jerker Fick, Noomi Asker, Lars Förlin, D. G. Joakim Larsson
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009 - 2009 -
ShotgunFunctionalizeR: an R-package for functional comparison of
metagenomes
Erik Kristiansson, Philip Hugenholtz, Daniel Dalevi
Bioinformatics - 2009 -
Characterization of the Zoarces viviparus liver transcriptome using massively parallel
pyrosequencing
Erik Kristiansson, Noomi Asker, Lars Förlin, D. G. Joakim Larsson
BMC Genomics - 2009 -
Predicting functional upstream open reading frames in Saccharomyces
cerevisiae
. Selpi, Christopher H. Bryant, Graham J.L. Kemp, Janeli Sarv, Erik Kristiansson, Per Sunnerhagen
BMC Bioinformatics - 2009 -
Evolutionary Forces Act on Promoter Length: Identification of Enriched Cis-Regulatory
Elements
Erik Kristiansson, Michael Thorsen, Markus J. Tamás, Olle Nerman
Molecular Biology and Evolution - 2009 -
Genetic basis of arsenite and cadmium tolerance in Saccharomyces
cerevisiae.
Michael Thorsen, Gabriel G Perrone, Erik Kristiansson, Mathew Traini, Tian Ye, Ian W Dawes, Olle Nerman, Markus J. Tamás
BMC genomics - 2009 -
Release of fluoroquinolones and other active pharmaceutical ingredients from Indian bulk drug manufacture – environmental fate and effects on antibiotic resistance development, microbial ecosystems and aquatic vertebrates. Invited platform
presentation.
D. G. Joakim Larsson, J Fick, Yougesh Schouche, Gunnar Carlsson, Sara Brosché, Lina-Maria Gunnarsson, RR Viduthalai, Richard Lindberg, Carolin Rutgersson, Hanna Söderström, Erik Kristiansson, Tobias Porsbring, Stefan Örn, Thomas Backhaus, Lars Förlin, Mats Tysklind, Malte Hermansson, Edward R.B. Moore
The Annual meeting of the Society for General Microbiology, March 30-April 2, Harrogate, UK - 2009 -
Pharmaceutical industry effluent diluted 1:500 affects global hepatic gene expression, CYP1A activity and plasma phosphate in
fish
Lina-Maria Gunnarsson, Erik Kristiansson, Carolin Rutgersson, Joachim Sturve, Jerker Fick, Noomi Asker, Lars Förlin, D. G. Joakim Larsson
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009 - 2009 -
Establishing the barnacle Balanus improvisus as a potent invertebrate monitoring system in marine
ecotoxicogenomics
Anders Blomberg, Susanna Falkbring, Magnus Alm Rosenblad, Noomi Asker, Erik Kristiansson, Linda Hasselberg, Ellinor Pettersson, Ulrika Lind, Jörgen Östling, Lars Förlin, D. G. Joakim Larsson
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009 - 2009 -
Characterization of the Zoarces viviparus liver transcriptome using massively parallel
pyrosequencing.
Erik Kristiansson, Noomi Asker, Lars Förlin, D. G. Joakim Larsson
Swedish Bioinformatics Workshop Abstract book, Umeå, March 12-13, 2009 - 2009 -
Large-scale gene expression analysis in non-model organisms – de novo transcriptome sequencing and microarray
design.
Erik Kristiansson, Noomi Asker, Lars Förlin, D. G. Joakim Larsson
Swedish Bioinformatics Workshop Abstract book, Umeå, March 12-13, 2009 - 2009 -
Multi-endpoint studies on the eelpout (Zoarces viviparus), using gene expression oligonucleotide
microarray
Noomi Asker, Erik Kristiansson, D. G. Joakim Larsson, Lars Förlin
PRIMO 15th International Symposium Abstract Book, Bordeaux, May 17-20, 2009 - 2009 -
Characterization of the Zoarces viviparus liver transcriptome using massively parallel
pyrosequencing
Noomi Asker, Erik Kristiansson, Lars Förlin, D. G. Joakim Larsson
PRIMO 15th International Symposium Abstract Book, Bordeaux, May 17-20, 2009 - 2009 -
Monitoring of the viviparous fish species eelpout (Zoarces viviparus) indicates environmental changes in coastal
waters.
Lars Förlin, Joachim Sturve, Jari Parkkonen, Erik Kristiansson, Noomi Asker, D. G. Joakim Larsson
19th Annual Meeting of SETAC Europe, SETAC 2009 Göteborg, May 31- June 4, 2009 - 2009 -
Pharmaceutical Industry Effluent Diluted 1:500 Affects Global Gene Expression, Cytochrome P4501A Activity and Plasma Phosphate in
Fish.
Lina-Maria Gunnarsson, Erik Kristiansson, Carolin Rutgersson, Joachim Sturve, J Fick, Lars Förlin, D. G. Joakim Larsson
Environmental toxicology and chemistry / SETAC - 2009 -
Multi-endpoint studies on the eelpout (Zoarces viviparus), using gene expression oligonucleotide
microarray
Noomi Asker, Erik Kristiansson, D. G. Joakim Larsson, Lars Förlin
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009 - 2009 -
Characterization of the Zoarces viviparus liver transcriptome using massively parallel
pyrosequencing
Erik Kristiansson, Noomi Asker, Lars Förlin, D. G. Joakim Larsson
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009 - 2009 -
Short-term oral exposure to effluent from bulk drug industries does not indicate acute toxic effects in
rat
Carolin Rutgersson, Lina-Maria Gunnarsson, Erik Kristiansson, D. G. Joakim Larsson
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009 - 2009 -
identification of novel biomarkers - a framework for cross-species gene expression
analysis
Tobias Österlund, Lina-Maria Gunnarsson, D. G. Joakim Larsson, Erik Kristiansson
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009 - 2009 -
The ITS region as a target for characterization of fungal communities using emerging sequencing
technologies
R. Henrik Nilsson, Martin Ryberg, Kessy Abarenkov, Elisabet Sjökvist, Erik Kristiansson
FEMS Microbiology Letters - 2009 -
A software pipeline for processing and identification of fungal ITS
sequences
R. Henrik Nilsson, Gunilla Bok, Martin Ryberg, Erik Kristiansson, Nils Hallenberg
Source Code for Biology and Medicine - 2009 -
An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal
diversity
Martin Ryberg, Erik Kristiansson, Elisabet Sjökvist, R. Henrik Nilsson
New Phytologist - 2009 -
Evolutionary conservation of human drug targets in organisms used for environmental risk
assessments.
Lina-Maria Gunnarsson, Alexandra Jauhiainen, Erik Kristiansson, Olle Nerman, D. G. Joakim Larsson
Environmental science & technology - 2008 -
Characterization of the Zoarces viviparus liver transcriptome using massively parallel
pyrosequencing
Erik Kristiansson, Noomi Asker, Lars Förlin, D. G. Joakim Larsson
The 9th International Conference on System Biology (ICSB) abstract book, Göteborg, August 22-28, 2008 - 2008 -
Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species
Identification
R. Henrik Nilsson, Erik Kristiansson, Martin Ryberg, Nils Hallenberg, Karl-Henrik Larsson
Evolutionary Bioinformatics - 2008 -
Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe
(Basidiomycota)
Martin Ryberg, R. Henrik Nilsson, Erik Kristiansson, Mats H. Töpel, Stig Jacobsson, Ellen Larsson
BMC Evolutionary Biology - 2008 -
Weighted Analysis of General Microarray
Experiments
Anders Sjögren, Erik Kristiansson, Mats Rudemo, Olle Nerman
BMC Bioinformatics - 2007 -
Statistical analysis of gene expression
data
Erik Kristiansson
2007 -
Sensitive and robust gene expression changes in fish exposed to estrogen – a microarray
approach
Lina-Maria Gunnarsson, Erik Kristiansson, Lars Förlin, Olle Nerman, D. G. Joakim Larsson
BMC Genomics - 2007 -
Quantitative transcriptome, proteome and sulfur metabolite profiling of the Saccharomyces cerevisiae response to
arsenite
Michael Thorsen, Gilles Lagniel, Erik Kristiansson, Christophe Junot, Olle Nerman, Jean Labarre, Markus J. Tamás
Physiological Genomics - 2007 -
Quantitative transcriptome, proteome and sulfur metabolite profiling of the Saccharomyces cerevisiae response to
arsenite
Michael Thorsen, Gilles Lagniel, Erik Kristiansson, Christophe Junot, Olle Nerman, Jean Labarre, Markus J. Tamás
Gordon Research Conference on Metals in Biology, Newport, USA - 2007 -
Weighted Analysis of General Microarray
Experiments
Anders Sjögren, Erik Kristiansson, Mats Rudemo, Olle Nerman
2007 -
Quality Optimised Analysis of General Paired Microarray
Experiments
Erik Kristiansson, Anders Sjögren, Mats Rudemo, Olle Nerman
Statistical Applications in Genetics and Molecular Biology - 2006 -
Quality Optimised Analysis of General Paired Microarray
Experiments
Erik Kristiansson, Anders Sjögren, Mats Rudemo, Olle Nerman
2006 -
Taxonomic reliability of DNA sequences in public sequence databases: A fungal
perspective
R. Henrik Nilsson, Martin Ryberg, Erik Kristiansson, Kessy Abarenkov, Karl-Henrik Larsson, Urmas Kõljalg
PLoS ONE - 2006 -
Predictive screening for regulators of conserved functional gene modules (gene batteries) in
mammals
Sven Nelander, Erik Larsson, Erik Kristiansson, Robert Månsson, Olle Nerman, Mikael Sigvardsson, Petter Mostad, Per Lindahl
BMC genomics - 2005 -
Approaching the taxonomic affiliation of unidentified sequences in public databases – an example from the mycorrhizal
fungi
R. Henrik Nilsson, Erik Kristiansson, Martin Ryberg, Karl-Henrik Larsson
BMC Bioinformatics - 2005 -
Weighted Analysis of Paired Microarray
Experiments
Erik Kristiansson, Anders Sjögren, Mats Rudemo, Olle Nerman
2005 -
Weighted Analysis of Paired Microarray
Experiments
Erik Kristiansson, Anders Sjögren, Mats Rudemo, Olle Nerman
Statistical Applications in Genetics and Molecular Biology - 2005 -
A new Method for Analysis of microarray Gene Expression
Assays
Erik Kristiansson
2005 -
Identifying factors involved in the cellular response to
arsenic
Michael Thorsen, Erik Kristiansson, Olle Nerman, Markus J. Tamás
Yeast Genetics and Molecular Biology Meeting, Seattle, USA - 2004 -
Identifying factors involved in the cellular response to
arsenic
Michael Thorsen, Erik Kristiansson, Olle Nerman, Markus J. Tamás
Functional Genomics Conference - from birth to death, Göteborg, Sweden - 2004