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Fanny Berglund
Bioinformatician
Core facilitiesAbout Fanny Berglund
I'm a bioinformatician at the Bioinformatics and Data Centre at the Sahlgrenska Academy, where we provide:
High throughput techniques for biomedical, clinical and pre-clinical research.
Wide range of statistical and bioinformatics support and training.
Cluster hardware and software infrastructure development
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Identification of Novel FosX Family Determinants from Diverse Environmental
Samples
Nicolas Kieffer, Maria-Elisabeth Böhm, Fanny Berglund, Nachiket P. Marathe, Michael R Gillings, D. G. Joakim Larsson
bioRxiv - 2024 -
The resistome and microbiome of wastewater treatment plant workers - The AWARE
study.
Fanny Berglund, Daloha Rodríguez-Molina, Gratiela Gradisteanu Pircalabioru, Hetty Blaak, Mariana-Carmen Chifiriuc, Ilda Czobor Barbu, Carl-Fredrik Flach, Irina Gheorghe-Barbu, Luminița Măruțescu, Marcela Popa, Ana Maria de Roda Husman, Laura Wengenroth, Heike Schmitt, D. G. Joakim Larsson
Environment international - 2023 -
Evidence for wastewaters as environments where mobile antibiotic resistance genes
emerge
Fanny Berglund, Stefan Ebmeyer, Erik Kristiansson, D. G. Joakim Larsson
Communications Biology - 2023 -
Extensive screening reveals previously undiscovered aminoglycoside resistance genes in human
pathogens
David Lund, Roelof Dirk Coertze, Marcos Parras-Moltó, Fanny Berglund, Carl-Fredrik Flach, Anna Johnning, D. G. Joakim Larsson, Erik Kristiansson
Communications Biology - 2023 -
Wastewater treatment plants, an "escape gate" for ESCAPE
pathogens
L. G. Marutescu, M. Popa, I. Gheorghe-Barbu, I. C. Barbu, D. Rodriguez-Molina, Fanny Berglund, H. Blaak, Carl-Fredrik Flach, M. A. Kemper, B. Spiessberger, L. Wengenroth, D. G. Joakim Larsson, D. Nowak, K. Radon, A. M. D. Husman, A. Wieser, H. Schmitt, G. P. Gradisteanu, C. O. Vrancianu, M. C. Chifiriuc
Frontiers in Microbiology - 2023 -
Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial
resistance
P. Munk, C. Brinch, F. D. Møller, T. N. Petersen, R. S. Hendriksen, A. M. Seyfarth, J. S. Kjeldgaard, C. A. Svendsen, B. van Bunnik, Fanny Berglund, A. Bego, P. Power, C. Rees, D. Lambrinidis, E. H. J. Neilson, K. Gibb, K. Coventry, P. Collignon, S. Cassar, F. Allerberger, A. Begum, Z. Z. Hossain, C. Worrell, O. Vandenberg, I. Pieters, D. T. Victorien, A. D. S. Gutierrez, F. Soria, V. R. Grujić, N. Mazalica, T. O. Rahube, C. A. Tagliati, D. Rodrigues, G. Oliveira, L. C. R. de Souza, I. Ivanov, B. I. Juste, T. Oumar, T. Sopheak, Y. Vuthy, A. Ngandijo, A. Nzouankeu, Z. A. A. J. Olivier, C. K. Yost, P. Kumar, S. K. Brar, D. A. Tabo, A. D. Adell, E. Paredes-Osses, M. C. Martinez, S. Cuadros-Orellana, C. Ke, H. Zheng, L. Baisheng, L. T. Lau, T. Chung, X. Jiao, Y. Yu, Z. JiaYong, J. F. B. Morales, M. F. Valencia, P. Donado-Godoy, K. J. Coulibaly, J. Hrenovic, M. Jergović, R. Karpíšková, Z. N. Deogratias, B. Elsborg, L. T. Hansen, P. E. Jensen, M. Abouelnaga, M. F. Salem, M. Koolmeister, M. Legesse, T. Eguale, A. Heikinheimo, S. Le Guyader, J. Schaeffer, J. E. Villacis, B. Sanneh, L. Malania, A. Nitsche, A. Brinkmann, S. Schubert, S. Hesse, T. U. Berendonk, C. K. S. Saba, J. Mohammed, P. K. Feglo, R. A. Banu, C. Kotzamanidis, E. Lytras, S. A. Lickes, B. Kocsis, N. Solymosi, T. R. Thorsteinsdottir, A. M. Hatha, M. Ballal, S. R. Bangera, F. Fani, M. Alebouyeh, D. Morris, L. O’Connor, M. Cormican, J. Moran-Gilad, A. Battisti, E. L. Diaconu, G. Corno, A. Di Cesare, P. Alba, J. Hisatsune, L. Yu, M. Kuroda, M. Sugai, S. Kayama, Z. Shakenova, C. Kiiyukia, E. Ng’eno, L. Raka, K. Jamil, S. A. Fakhraldeen, T. Alaati, A. Bērziņš, J. Avsejenko, K. Kokina, M. Streikisa, V. Bartkevics, G. M. Matar, Z. Daoud, A. Pereckienė, C. Butrimaite-Ambrozeviciene, C. Penny, A. Bastaraud, T. Rasolofoarison, J. M. Collard, L. H. Samison, M. R. Andrianarivelo, D. L. Banda, A. Amin, H. Rajandas, S. Parimannan, D. Spiteri, M. V. Haber, S. J. Santchurn, A. Vujacic, D. Djurovic, B. Bouchrif, B. Karraouan, D. C. Vubil, P. Pal, H. Schmitt, M. van Passel, G. J. Jeunen, N. Gemmell, S. T. Chambers, F. P. Mendoza, J. Huete-Pιrez, S. Vilchez, A. O. Ahmed, I. R. Adisa, I. A. Odetokun, K. Fashae, A. M. Sørgaard, A. L. Wester, P. Ryrfors, R. Holmstad, M. Mohsin, R. Hasan, S. Shakoor, N. W. Gustafson, C. H. Schill, M. L. Z. Rojas, J. E. Velasquez, B. B. Magtibay, K. Catangcatang, R. Sibulo, F. C. Yauce, D. Wasyl, C. Manaia, J. Rocha, J. Martins, P. Álvaro, D. Di Yoong Wen, H. Shin, H. G. Hur, S. Yoon, G. Bosevska, M. Kochubovski, R. Cojocaru, O. Burduniuc, P. Y. Hong, M. R. Perry, A. Gassama, V. Radosavljevic, M. Y. F. Tay, R. Zuniga-Montanez, S. Wuertz, D. Gavačová, K. Pastuchová, P. Truska, M. Trkov, K. Keddy, K. Esterhuyse, M. J. Song, M. Quintela-Baluja, M. G. Lopez, M. Cerdà-Cuéllar, R. R. D. P. Perera, N. K. B. K. R. G. W. Bandara, H. I. Premasiri, S. Pathirage, K. Charlemagne, Carolin Rutgersson, L. Norrgren, S. Örn, R. Boss, T. Van der Heijden, Y. P. Hong, H. H. Kumburu, R. H. Mdegela, Y. M. G. Hounmanou, K. Chonsin, O. Suthienkul, V. Thamlikitkul, A. M. de Roda Husman, B. Bidjada, B. M. Njanpop-Lafourcade, S. C. Nikiema-Pessinaba, B. Levent, C. Kurekci, F. Ejobi, J. B. Kalule, J. Thomsen, O. Obaidi, L. M. Jassim, A. Moore, A. Leonard, D. W. Graham, J. T. Bunce, L. Zhang, W. H. Gaze, B. Lefor, D. Capone, E. Sozzi, J. Brown, J. S. Meschke, M. D. Sobsey, M. Davis, N. K. Beck, P. Sukapanpatharam, P. Truong, R. Lilienthal, S. Kang, T. E. Wittum, N. Rigamonti, P. Baklayan, C. D. Van, D. M. N. Tran, N. Do Phuc, G. Kwenda, M. Koopmans, M. Woolhouse, F. M. Aarestrup, D. G. Joakim Larsson
Nature Communications - 2022 -
Large-scale characterization of the macrolide resistome reveals high diversity and several new pathogen-associated
genes
David Lund, Nicolas Kieffer, Marcos Parras-Moltó, Stefan Ebmeyer, Fanny Berglund, Anna Johnning, D. G. Joakim Larsson, Erik Kristiansson
Microbial genomics - 2022 -
GEnView: a gene-centric, phylogeny-based comparative genomics pipeline for bacterial genomes and
plasmids
Stefan Ebmeyer, Roelof Dirk Coertze, Fanny Berglund, Erik Kristiansson, D. G. Joakim Larsson
Bioinformatics - 2022 -
International Travel as a Risk Factor for Carriage of Extended-Spectrum beta-Lactamase-Producing Escherichia coli in a Large Sample of European Individuals-The AWARE
Study
D. Rodriguez-Molina, Fanny Berglund, H. Blaak, Carl-Fredrik Flach, M. Kemper, L. Marutescu, G. P. Gradisteanu, M. Popa, B. Spiessberger, L. Wengenroth, M. C. Chifiriuc, D. G. Joakim Larsson, D. Nowak, K. Radon, A. M. D. Husman, A. Wieser, H. Schmitt
INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH - 2022 -
Carriage of ESBL-producing Enterobacterales in wastewater treatment plant workers and surrounding residents - the AWARE
Study
D. Rodriguez-Molina, Fanny Berglund, H. Blaak, Carl-Fredrik Flach, M. Kemper, L. Marutescu, G. P. Gradisteanu, M. Popa, B. Spiessberger, T. Weinmann, L. Wengenroth, M. C. Chifiriuc, D. G. Joakim Larsson, D. Nowak, K. Radon, A. M. D. Husman, A. Wieser, H. Schmitt
European Journal of Clinical Microbiology & Infectious Diseases - 2021 -
An updated phylogeny of the
metallo-β-lactamases.
Fanny Berglund, Anna Johnning, D. G. Joakim Larsson, Erik Kristiansson
The Journal of antimicrobial chemotherapy - 2021 -
Antibiotic Resistance in Wastewater Treatment Plants and Transmission Risks for Employees and Residents: The Concept of the AWARE
Study
L. Wengenroth, Fanny Berglund, H. Blaak, M. C. Chifiriuc, Carl-Fredrik Flach, G. G. Pircalabioru, D. G. Joakim Larsson, L. Marutescu, M. W. J. van Passel, M. Popa, K. Radon, A. M. D. Husman, D. Rodriguez-Molina, T. Weinmann, A. Wieser, H. Schmitt
Antibiotics-Basel - 2021 -
Predicting clinical resistance prevalence using sewage metagenomic
data
Antti Karkman, Fanny Berglund, Carl-Fredrik Flach, Erik Kristiansson, D. G. Joakim Larsson
Communications Biology - 2020 -
Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance
genes
Fanny Berglund, Maria-Elisabeth Böhm, Anton Martinsson, Stefan Ebmeyer, Tobias Österlund, Anna Johnning, D. G. Joakim Larsson, Erik Kristiansson
Microbial genomics - 2020 -
Structural and biochemical characterization of the environmental MBLs MYO-1, ECV-1 and
SHD-1.
Christopher Fröhlich, Vidar Sørum, Sandra Huber, Ørjan Samuelsen, Fanny Berglund, Erik Kristiansson, Stathis Kotsakis, Nachiket Marathe, D. G. Joakim Larsson, Hanna-Kirsti S Leiros
The Journal of antimicrobial chemotherapy - 2020 -
Identification and reconstruction of novel antibiotic resistance genes from
metagenomes
Fanny Berglund, Tobias Österlund, Fredrik Boulund, Nachiket Marathe, D. G. Joakim Larsson, Erik Kristiansson
Microbiome - 2019 -
Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance
genes
Nachiket Marathe, Fanny Berglund, Mohammad Razavi, Chandan Pal, Johannes Dröge, S. Samant, Erik Kristiansson, D. G. Joakim Larsson
Microbiome - 2019 -
Functional metagenomics reveals a novel carbapenem-hydrolyzing mobile beta-lactamase from Indian river sediments contaminated with antibiotic production
waste
Nachiket Marathe, Anders Janzon, Stathis Kotsakis, Carl-Fredrik Flach, Mohammad Razavi, Fanny Berglund, Erik Kristiansson, D. G. Joakim Larsson
Environment International - 2018 -
Identification of 76 novel B1 metallo-beta-lactamases through large-scale screening of genomic and metagenomic
data
Fanny Berglund, Nachiket Marathe, Tobias Österlund, Johan Bengtsson-Palme, Stathis Kotsakis, Carl-Fredrik Flach, D. G. Joakim Larsson, Erik Kristiansson
Microbiome - 2017 -
Computational discovery and functional validation of novel fluoroquinolone resistance genes in public metagenomic data
sets
Fredrik Boulund, Fanny Berglund, Carl-Fredrik Flach, Johan Bengtsson-Palme, Nachiket Marathe, D. G. Joakim Larsson, Erik Kristiansson
BMC Genomics - 2017 -
Identification of novel antibiotic resistance genes through large-scale data
analysis
Fanny Berglund
2017 -
Preferential Sampling and Small-Scale Clustering of Gyrotactic Microswimmers in
Turbulence
Kristian Gustavsson, Fanny Berglund, Per R. Jonsson, Bernhard Mehlig
Physical Review Letters - 2016