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- Bengt Oxelman
Bengt Oxelman
Professor
Department of Biological & Environmental Sciences-
A dataset of 40 assembled and annotated transcriptomes from 34 species in Silene and related
genera
Patrik Cangren, Yann Bertrand, John M. Braverman, Gregor Duncan Gilfillan, Matthew B. Hamilton, Bengt Oxelman
DATA IN BRIEF - 2024 -
Chloroplast genome and nuclear loci data for 71 Medicago
species
Filipe de Sousa, Yann J. K. Bertrand, Alexander Zizka, Patrik Cangren, Bengt Oxelman, Bernard E. Pfeil
DATA IN BRIEF - 2024 -
Revision of Seriphium plumosum (Gnaphalieae: Asteraceae) in southern Africa with description of new species in
Seriphium
Zaynab Shaik, G. Anthony Verboom, Bengt Oxelman, Nicola G. Bergh
South African Journal of Botany - 2024 -
Retrieval of long DNA reads from herbarium
specimens
Anne-Sophie Quatela, Patrik Cangren, Farzaneh Jafari, Thibauld Michel, Hugo J. de Boer, Bengt Oxelman
AOB PLANTS - 2023 -
Flora of Nepal Notulae IV: New species and resurrected names in
Silene
Magnus Lidén, Bengt Oxelman
Edinburgh journal of botany - 2023 -
Genomic, Phenotypic, and Ecological Data Provide Decisive Support for Multiple Species in the Seriphium plumosum Complex (Gnaphalieae:
Asteraceae)
Zaynab Shaik, Nicola G Bergh, Bengt Oxelman, G Anthony Verboom
Bulletin of the Society of Systematic Biologists - 2023 -
Species Delimitation, Chapter
17
Anne-Sophie Quatela, Bengt Oxelman
Molecular identification of plants: from sequence to species. de Boer H, Rydmark MO, Verstraete B, Gravendeel B - 2022 -
Chapter 19 Systematics and
evolution
Ntwai A. Moiloa, Meshack N. Dludlu, Abubakar Bello, Zaynab Shaik, A. Muthama Muasya, Bengt Oxelman
In: de Boer H, Rydmark MO, Verstraete B, Gravendeel B (2022) Molecular identification of plants: from sequence to species. Advanced Books. - 2022 -
Re-establishment of Silene neglecta Ten. (Caryophyllaceae) with taxonomic notes on some related
taxa
L. Saez, M. Mesbah, J. Lopez-Alvarado, G. Bacchetta, R. El Mokni, L. Peruzzi, Bengt Oxelman
Phytokeys - 2022 -
Biogeographic origins of southern African Silene
(Caryophyllaceae)
Ntwai A. Moiloa, M. Mesbah, S. Nylinder, J. Manning, F. Forest, H. J. de Boer, Christine D. Bacon, Bengt Oxelman
Molecular Phylogenetics and Evolution - 2021 -
Multiple species delimitation approaches applied to the avian lark genus
Alaudala
P. Alstrom, J. van Linschooten, P. F. Donald, G. Sundev, Z. Mohammadi, F. Ghorbani, A. Shafaeipour, A. van den Berg, M. Robb, M. Aliabadian, C. T. Wei, F. M. Lei, Bengt Oxelman, Urban Olsson
Molecular Phylogenetics and Evolution - 2021 -
Gene count from target sequence capture places three whole genome duplication events in Hibiscus L.
(Malvaceae)
J. S. Eriksson, Christine D. Bacon, Dominic J. Bennett, Bernard E. Pfeil, Bengt Oxelman, Alexandre Antonelli
BMC Ecology and Evolution - 2021 -
A Guide to Carrying Out a Phylogenomic Target Sequence Capture
Project
Tobias Andermann, Maria Fernanda Torres Jimenez, Pável Matos-Maraví, R. Batista, José Luis Blanco-Pastor, A. L. S. Gustafsson, L. Kistler, Isabel M. Liberal, Bengt Oxelman, Christine D. Bacon, Alexandre Antonelli
Frontiers in Genetics - 2020 -
Phylogeny and species delimitation in Silene sect. Arenosae (Caryophyllaceae): a new
section
F. Eggens, Farzaneh Jafari, M. Thollesson, S. Crameri, S. Zarre, Bengt Oxelman
Phytokeys - 2020 -
(2755) Proposal to conserve the name Silene linearis Decne. against S. linearis Sweet
(Caryophyllaceae)
F. Eggens, Farzaneh Jafari, S. Zarre, Bengt Oxelman
Taxon - 2020 -
Phylogeny ofAcanthophyllums.l. revisited: An update on generic concept and sectional
classification
A. Pirani, H. Moazzeni, S. Zarre, R. K. Rabeler, Bengt Oxelman, A. V. Pavlenko, A. Kovalchuk
Taxon - 2020 -
A new taxonomic backbone for the infrageneric classification of the species-rich genus
Silene(Caryophyllaceae)
Farzaneh Jafari, S. Zarre, A. Gholipour, F. Eggens, R. K. Rabeler, Bengt Oxelman
Taxon - 2020 -
Notes on the genus Silene (Caryophyllaceae, Sileneae) in
Iran
F. Jafari, M. Mirtadzadini, A. Gholipour, R. Rabeler, Bengt Oxelman, S. Zarre
Phytotaxa - 2019 -
Systematic significance of seed morphology in Acanthophyllum (Caryophyllaceae: tribe Caryophylleae) in
Iran
A. Pirani, S. Zarre, R. Rabeler, M. Assam, M. R. Joharchi, Bengt Oxelman
Phytotaxa - 2019 -
Embracing heterogeneity: coalescing the Tree of Life and the future of
phylogenomics.
Gustavo A Bravo, Christine D. Bacon, Alexandre Antonelli, Krzysztof Bartoszek, Mozes P K Blom, Stella Huynh, Graham Jones, L Lacey Knowles, Sangeet Lamichhaney, Thomas Marcussen, Hélène Morlon, Luay K Nakhleh, Bengt Oxelman, Bernard E. Pfeil, Alexander Schliep, Niklas Wahlberg, Fernanda P Werneck, John Wiedenhoeft, Sandi Willows-Munro, Scott V Edwards
PeerJ - 2019 -
Evolution of sex determination and heterogamety changes in section Otites of the genus
Silene
V. Balounova, R. Gogela, R. Cegan, Patrik Cangren, J. Zluvova, J. Safar, V. Kovacova, R. Bergero, R. Hobza, B. Vyskot, Bengt Oxelman, D. Charlesworth, B. Janousek
Scientific Reports - 2019 -
Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved
Elements
Tobias Andermann, A. M. Fernandes, Urban Olsson, Mats H. Töpel, Bernard E. Pfeil, Bengt Oxelman, A. Aleixo, B. C. Faircloth, Alexandre Antonelli
Systematic Biology - 2019 -
Origin and Diversification of South American Polyploid Silene Sect. Physolychnis (Caryophyllaceae) in the Andes and
Patagonia
B. Frajman, P. Schonswetter, H. Weiss-Schneeweiss, Bengt Oxelman
Frontiers in Genetics - 2018 -
Untangling phylogenetic patterns and taxonomic confusion in tribe Caryophylleae (Caryophyllaceae) with special focus on generic
boundaries
H. Madhani, R. Rabeler, A. Pirani, Bengt Oxelman, G. Heubl, S. Zarre
Taxon - 2018 -
Evolutionary persistence in Gunnera and the contribution of southern plant groups to the tropical Andes biodiversity
hotspot
Christine D. Bacon, F. J. Velásquez-Puentes, L. F. Hinojosa, Thomas Schwartz, Bengt Oxelman, Bernard E. Pfeil, M. T. K. Arroyo, L. Wanntorp, Alexandre Antonelli
PeerJ - 2018 -
Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri
(Fabaceae)
Jonna S. Eriksson, Filipe de Sousa, Yann Bertrand, Alexandre Antonelli, Bengt Oxelman, Bernard E. Pfeil
BMC Evolutionary Biology - 2018 -
Recombination provides evidence for ancient hybridisation in the Silene aegyptiaca (Caryophyllaceae)
complex
Bernard E. Pfeil, Zeynep Toprak, Bengt Oxelman
Organisms Diversity & Evolution - 2017 -
Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of
Taxa.
Alexandre Antonelli, Hannes Hettling, Fabien L. Condamine, Karin Vos, R. Henrik Nilsson, Michael J Sanderson, Hervé Sauquet, Ruud Scharn, Daniele Silvestro, Mats H. Töpel, Christine D. Bacon, Bengt Oxelman, Rutger A Vos
Systematic biology - 2017 -
A phylogenetic circumscription of Silene sect. Siphonomorpha (Caryophyllaceae) in the Mediterranean
basin
Yamama Naciri, Pierre Emmanuel Du Pasquier, Magnus Lundberg, Daniel Jeanmonod, Bengt Oxelman
Taxon - 2017 -
Phylogenetics of
Allopolyploids
Bengt Oxelman, Anne Krag Brysting, Graham Jones, Thomas Marcussen, Christoph Oberprieler, Bernard E. Pfeil
Annual Review of Ecology, Evolution, and Systematics - 2017 -
Using genomic location and coalescent simulation to investigate gene tree discordance in Medicago
L.
Filipe de Sousa, Yann Bertrand, J.J. Doyle, Bengt Oxelman, Bernard E. Pfeil
Systematic Biology - 2017 -
Molecular phylogeny of the cosmopolitan aquatic plant genus Limosella (Scrophulariaceae) with a particular focus on the origin of the Australasian L.
curdieana.
Yu Ito, Norio Tanaka, Dirk C Albach, A Muthama Muasya, Bengt Oxelman, Anders S Barfod
Journal of plant research - 2017 -
Species delimitation without prior knowledge: DISSECT reveals extensive cryptic speciation in the Silene aegyptiaca complex
(Caryophyllaceae).
Zeynep Toprak, Bernard E. Pfeil, Graham Jones, Thomas Marcussen, A.S. Ertekin, Bengt Oxelman
Molecular Phylogenetics and Evolution - 2016 -
Colonization and diversification in the African 'sky islands': insights from fossil-calibrated molecular dating of Lychnis
(Caryophyllaceae)
A. Gizaw, C. Brochmann, S. Nemomissa, T. Wondimu, C. A. Masao, F. M. Tusiime, A. A. Abdi, Bengt Oxelman, M. Popp, D. Dimitrov
New Phytologist - 2016 -
From Gene Trees to a Dated Allopolyploid Network: Insights from the Angiosperm Genus Viola
(Violaceae)
Thomas Marcussen, L. Heier, A.K. Brysting, Bengt Oxelman, K. Jakobsen
Systematic Biology - 2015 -
A taxonomic backbone for the global synthesis of species diversity in the angiosperm order
Caryophyllales
P. Hernández-Ledesma, W. G. Berendsohn, T. Borsch, S. von Mering, H. Akhani, S. Arias, I. Castañeda-Noa, U. Eggli, Roger Eriksson, H. Flores-Olvera, S. Fuentes-Bazán, G. Kadereit, C. Klak, N. Korotkova, R. Nyffeler, G. Ocampo, H. Ochoterena, Bengt Oxelman, R. K. Rabeler, A. Sanchez, B. O. Schlumpberger, P. Uotila
Willdenowia - 2015 -
Assignment of homoeologues to parental genomes in allopolyploids for species tree inference, with an example from Fumaria
(Papaveraceae)
Yann Bertrand, Anne-Cathrine Scheen, Thomas Marcussen, Bernard E. Pfeil, Filipe de Sousa, Bengt Oxelman
Systematic Biology - 2015 -
DISSECT: an assignment-free Bayesian discovery method for species delimitation under the multispecies
coalescent
Graham Jones, Zeynep Aydin, Bengt Oxelman
Bioinformatics - 2015 -
SUPERSMART: ecology and evolution in the era of big
data
Alexandre Antonelli, Fabien L. Condamine, Johannes Hettling, Karin Nilsson, R. Henrik Nilsson, Bengt Oxelman, Michael J Sanderson, Herve Sauquet, Ruud Scharn, Daniele Silvestro, Mats H. Töpel, Rutger A Vos
PeerJ PrePrints - 2014 -
Phylogenetic properties of 50 nuclear loci in Medicago (Leguminosae) generated using multiplexed sequence capture and next-generation
sequencing
Filipe de Sousa, Yann Bertrand, Stephan Nylinder, Bengt Oxelman, Jonna S. Eriksson, Bernard E. Pfeil
PLoS ONE - 2014 -
Marginal Likelihood Estimate Comparisons to Obtain Optimal Species Delimitations in Silene sect. Cryptoneurae
(Caryophyllaceae)
Zeynep Aydin, Thomas Marcussen, A. S. Ertekin, Bengt Oxelman
Plos One - 2014 -
A new section of Silene (Caryophyllaceae) including a new species from South Anatolia,
Turkey
Zeynep Aydin, A. S. Ertekin, E. Langstrom, Bengt Oxelman
Phytotaxa - 2014 -
Phylogenetic perspectives on diversification, biogeography and character evolution in the species-rich genus Erysimum (Erysimeae; Brassicaceae) based on a densely sampled ITS
approach
Hamid Moazzeni, S. Zarre, Bernard E. Pfeil, Yann Bertrand, D.A. German, I.A. Al-Shehbaz, K. Mummenhof, Bengt Oxelman
Botanical journal of the Linnean Society - 2014 -
Molecular phylogeny of Acanthophyllum (Caryophyllaceae, Caryophylleae), with emphasis on infrageneric
classification
Atefeh Pirani, S. Zarre, Bernard E. Pfeil, Yann Bertrand, M. Assadi, Bengt Oxelman
Taxon - 2014 -
Statistical Inference of Allopolyploid Species Networks in the Presence of Incomplete Lineage
Sorting.
Graham Jones, Serik Sagitov, Bengt Oxelman
Systematic biology - 2013 -
Time to a single hybridization event in a group of species with unknown ancestral
history
Krzysztof Bartoszek, Graham Jones, Bengt Oxelman, Serik Sagitov
Journal of Theoretical Biology - 2013 -
Incorporating molecular data in fungal systematics: a guide for aspiring
researchers
Kevin D. Hyde, Dhanushka Udayanga, Dimuthu S. Manamgoda, Leho Tedersoo, Ellen Larsson, Kessy Abarenkov, Yann Bertrand, Bengt Oxelman, Martin Hartmann, Håvard Kauserud, Martin Ryberg, Erik Kristiansson, R. Henrik Nilsson
Current Research in Environmental and Applied Mycology - 2013 -
Evolution of sex determination systems with heterogametic males and females in
silene.
Veronika Slancarova, Jana Zdanska, Bohuslav Janousek, Martina Talianova, Christian Zschach, Jitka Zluvova, Jiri Siroky, Viera Kovacova, Hana Blavet, Jiri Danihelka, Bengt Oxelman, Alex Widmer, Boris Vyskot
Evolution; international journal of organic evolution - 2013 -
Life-history strategy defends against disease and may select against physiological
resistance
A. K. Gibson, E. Petit, J. Mena-Ali, Bengt Oxelman, M. E. Hood
Ecology and Evolution - 2013 -
Taxonomic revision of Atocion and Viscaria (Sileneae,
Caryophyllaceae)
B. Frajman, M. Thollesson, Bengt Oxelman
Botanical Journal of the Linnean Society - 2013 -
Introgressive hybridization between anciently diverged lineages of Silene
(Caryophyllaceae)
Anna Petri, Bernard E. Pfeil, Bengt Oxelman
PLoS ONE - 2013 -
Spatiotemporal reconstruction of the Aquilegia rapid radiation through next-generation sequencing of rapidly evolving cpDNA
regions.
Simone Fior, Mingai Li, Bengt Oxelman, Roberto Viola, Scott A Hodges, Lino Ometto, Claudio Varotto
The New phytologist - 2013 -
A dated species-tree approach to the trans-Pacific disjunction of the genus Jovellana (Calceolariaceae,
Lamiales)
Stephan Nylinder, U. Swenson, Claes Persson, S. B. Janssens, Bengt Oxelman
Taxon - 2012 -
Use of allele-specific sequencing primers is an efficient alternative to PCR subcloning of low-copy nuclear
genes
Anne-Cathrine Scheen, Bernard E. Pfeil, Anna Petri, N. Heidari, Stephan Nylinder, Bengt Oxelman
Molecular Ecology Resources - 2012 -
Phylogenetic relationships of Silene multinervia and Silene section Conoimorpha
(Caryophyllaceae).
Anja Rautenberg, D. Sloan, V. Aldén, Bengt Oxelman
Systematic Botany - 2012 -
The taxonomic identity of the 30,000-y-old plant regenerated from fruit tissue buried in Siberian
permafrost.
Bengt Oxelman, Anna Petri, Reidar Elven, Georgy Lazkov
Proceedings of the National Academy of Sciences of the United States of America - 2012 -
Inferring species networks from gene trees in high-polyploid North American and Hawaiian violets (Viola,
Violaceae).
Thomas Marcussen, Kjetill S Jakobsen, Jirí Danihelka, Harvey E Ballard, Kim Blaxland, Anne K Brysting, Bengt Oxelman
Systematic biology - 2012 -
Phylogenetic relationships within Silene (Caryophyllaceae) section
Physolychnis
Anna Petri, Bengt Oxelman
Taxon - 2011 -
Correction – a statistical approach for distinguishing hybridization and incomplete lineage
sorting
S. Joly, Bernard E. Pfeil, Bengt Oxelman, P.A. McLenachan, P.J. Lockhart
American Naturalist - 2010 -
Evolution of plant RNA polymerase IV/V genes: evidence of subneofunctionalization of duplicated NRPD2/NRPE2-like paralogs in Viola
(Violaceae).
Thomas Marcussen, Bengt Oxelman, Anna Skog, Kjetill S Jakobsen
BMC evolutionary biology - 2010 -
Geographic and phylogenetic patterns in Silene section Melandrium (Caryophyllaceae) as inferred from chloroplast and nuclear DNA
sequences.
Anja Rautenberg, Louise Hathaway, Bengt Oxelman, Honor C Prentice
Molecular phylogenetics and evolution - 2010 -
Distribution of the anther-smut pathogen Microbotryum on species of the
Caryophyllaceae.
Michael E Hood, Jorge I Mena-Alí, Amanda K Gibson, Bengt Oxelman, Tatiana Giraud, Roxana Yockteng, Mary T K Arroyo, Fabio Conti, Amy B Pedersen, Pierre Gladieux, Janis Antonovics
The New phytologist - 2010 -
Phylogenetic analysis of mitochondrial substitution rate variation in the angiosperm tribe
Sileneae.
Daniel B Sloan, Bengt Oxelman, Anja Rautenberg, Douglas R Taylor
BMC evolutionary biology - 2009 -
Inferring polyploid phylogenies from multiply-labeled gene
trees.
Martin Lott, Andreas Spillner, Katharina T Huber, Anna Petri, Bengt Oxelman, Vincent Moulton
BMC evolutionary biology - 2009 -
Reticulate evolution in the genus Fumaria
(Papaveraceae).
Anne-Cathrine Scheen, Bengt Oxelman
Botany & Mycology 2009 - 2009 -
Indications of horizontal gene transfer between nuclear genomes in distantly related
Silene
Anna Petri, Bengt Oxelman
Botany & Mycology 2009 - 2009 -
Hierarchical and reticulate evolution in plants, with examples from
Sileneae.
Bengt Oxelman
Taeckholmia - 2009 -
Phylogenetic relationships and optimal genealogical species delimitations of Silene section Melandrium
(Caryophyllaceae).
Bengt Oxelman, Anja Rautenberg, Honor Prentice, Louise Hathaway
Botany & Mycology 2009 - 2009 -
Phylogenetic relationships of Atocion and Viscaria (Sileneae, Caryophyllaceae) inferred from chloroplast, nuclear ribosomal, and low-copy gene DNA
sequences.
B. Frajman, Nahid Heidari, Bengt Oxelman
Taxon - 2009 -
Hybrid Origins and Homoploid Reticulate Evolution within Heliosperma (Sileneae, Caryophyllaceae) – a Multigene Phylogenetic Approach with Relative
Dating.
B. Frajman, F. Eggens, Bengt Oxelman
Systematic Biology - 2009 -
Phylogenies without roots? A plea for the use of vouchers in molecular phylogenetic
studies.
Fredrik Pleijel, U Jondelius, Erika Norlinder, Arne Nygren, Bengt Oxelman, C Schander, Per Sundberg, M Thollesson
Molecular phylogenetics and evolution - 2008 -
Conflicting Phylogenetic Signals in the SlX1/Y1 Gene in
Silene.
Rautenberg, Filatov, Svennblad, Heidari, Bengt Oxelman
BMC evolutionary biology - 2008 -
Reticulate or tree-like chloroplast DNA evolution in Sileneae
(Caryophyllaceae)?
Per Erixon, Bengt Oxelman
Molecular phylogenetics and evolution - 2008 -
Whole-gene positive selection, elevated synonymous substitution rates, duplication, and indel evolution of the chloroplast clpP1
gene.
Per Erixon, Bengt Oxelman
PLoS ONE - 2008 -
Untangling complex histories of genome mergings in high
polyploids
A. K. Brysting, Bengt Oxelman, K. T. Huber, V. Moulton, C. Brochmann
Systematic Biology - 2007 -
Bayesian support is larger than bootstrap support in phylogenetic inference: a mathematical
argument
Tom Britton, Bodil Svennblad, Per Erixon, Bengt Oxelman
Mathematical Medicine and Biology - 2007 -
Reticulate phylogenetics and phytogeographical structure of Heliosperma (Sileneae, Caryophyllaceae) inferred from chloroplast and nuclear DNA
sequences
B. Frajman, Bengt Oxelman
Molecular Phylogenetics and Evolution - 2007 -
Origin and evolution of North American polyploid Silene
(Caryophyllaceae)
M. Popp, Bengt Oxelman
American Journal of Botany - 2007 -
The origin and number of introductions of the Hawaiian endemic Silene species
(Caryophyllaceae)
F. Eggens, M. Popp, M. Nepokroeff, W. L. Wagner, Bengt Oxelman
American Journal of Botany - 2007